This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 8 Casal2 model configurations (3 BetaDiff, 2 CppAD, and 3 ADOL-C).
The CASAL model sensitivity 1 has a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6).
The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6). The Casal2 CppAD models have a tolerance value of 1e-9.
## [1] "Mon Mar 2 13:46:18 2020"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
##
## locale:
## [1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8
## [5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8
## [7] LC_PAPER=en_GB.UTF_8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] casal2_1.0 casal_2.30 devtools_2.2.2 usethis_1.5.1 rlist_0.4.6.1
## [6] ggplot2_3.2.1
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.3 pillar_1.4.3 compiler_3.6.0 remotes_2.1.1
## [5] prettyunits_1.1.1 tools_3.6.0 testthat_2.3.1 pkgload_1.0.2
## [9] pkgbuild_1.0.6 digest_0.6.25 memoise_1.1.0 evaluate_0.14
## [13] lifecycle_0.1.0 tibble_2.1.3 gtable_0.3.0 pkgconfig_2.0.3
## [17] rlang_0.4.5 cli_2.0.2 yaml_2.2.1 xfun_0.12
## [21] withr_2.1.2 dplyr_0.8.4 stringr_1.4.0 knitr_1.28
## [25] desc_1.2.0 fs_1.3.1 rprojroot_1.3-2 grid_3.6.0
## [29] tidyselect_0.2.5 glue_1.3.1 data.table_1.12.8 R6_2.4.1
## [33] processx_3.4.2 fansi_0.4.1 rmarkdown_2.1 sessioninfo_1.1.1
## [37] callr_3.4.2 purrr_0.3.3 magrittr_1.5 backports_1.1.5
## [41] ps_1.3.2 ellipsis_0.3.0 scales_1.1.0 htmltools_0.4.0
## [45] assertthat_0.2.1 colorspace_1.4-1 stringi_1.4.6 lazyeval_0.2.2
## [49] munsell_0.5.0 crayon_1.3.4
# read in CASAL MPD results
cas_mpd_filename <- file.path(base_dir, 'CASAL', mpd_run)
cas_mpd <- casal::extract.mpd(cas_mpd_filename)
cas_corr <- casal::extract.correlation.matrix(cas_mpd_filename)
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cas_conv <- get_convergence_information(cas_mpd_filename)
c1_quant <- cas_mpd$quantities
cas_mpd_sens1_filename <- file.path(base_dir, 'CASAL_sens1', mpd_run)
cas_mpd_sens1 <- casal::extract.mpd(cas_mpd_sens1_filename)
cas_sens1_corr <- casal::extract.correlation.matrix(cas_mpd_sens1_filename)
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cas_sens1_conv <- get_convergence_information(cas_mpd_sens1_filename)
c1_sens1_quant <- cas_mpd_sens1$quantities
C2_subdir <- c('betadiff_casal_flags_on',
'betadiff_casal_flags_off',
'betadiff_casal_flags_on_low_tol',
'cppad_casal_flags_on',
'cppad_casal_flags_off',
'adolc_casal_flags_on',
'adolc_casal_flags_off',
'adolc_casal_flags_on_low_tol')
# find the non-zero-sized parameter estimate files for the C2 models
C2_subdir <- unlist(sapply(C2_subdir, function(c_dir) if ( file.access(file.path(base_dir, 'Casal2', c_dir, params_est), 4) == 0 &
file.size(file.path(base_dir, 'Casal2', c_dir, params_est)) > 0 )
{ return (c_dir) }, USE.NAMES=FALSE ))
num_C2_models <- length(C2_subdir)
C2_color <- c('blue', 'green3', 'red', 'gold', 'magenta', 'cyan', 'brown', 'orange')
# read in Casal2 MPD results
cas2_mpd <- list()
cas2_corr <- list()
cas2_conv <- list()
for (c in 1:num_C2_models)
{
cas2_mpd_filename <- file.path(base_dir, 'Casal2', C2_subdir[c], mpd_run)
cas2_mpd[[c]] <- casal2::extract.mpd(cas2_mpd_filename)
cas2_corr[[c]] <- casal2::extract.correlation.matrix(mpd_out, file.path(base_dir, 'Casal2', C2_subdir[c]))
cas2_conv[[c]] <- get_convergence_information(cas2_mpd_filename)
}
Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results
| rownames | Base_Model | Sensitivity_1 | Percent_Diff |
| q[CSacous].q | 0.43115 | 0.43116 | -0.003 |
| q[WCacous].q | 0.30025 | 0.30024 | 0.003 |
| q[CRsum].q | 0.07431 | 0.07431 | 0.007 |
| q[SAsum].q | 0.05925 | 0.05925 | 0.001 |
| q[SAaut].q | 0.06717 | 0.06717 | 0.002 |
| relative_abundance[CRsumbio].cv_process_error | 0.14048 | 0.14048 | 0.001 |
| relative_abundance[SAsumbio].cv_process_error | 0.43061 | 0.43061 | -0.000 |
| log_B0_total | 14.33950 | 14.33950 | 0.000 |
| B0_prop_stock1 | 0.32872 | 0.32871 | 0.003 |
| natural_mortality.all | 0.29598 | 0.29598 | -0.002 |
| selectivity[Wspsl].shift_a | -0.21743 | -0.21744 | -0.005 |
| recruitment[E].YCS1 | 0.44781 | 0.44782 | -0.001 |
| recruitment[E].YCS2 | 0.72678 | 0.72680 | -0.002 |
| recruitment[E].YCS3 | 0.78452 | 0.78454 | -0.002 |
| recruitment[E].YCS4 | 1.35998 | 1.36001 | -0.002 |
| recruitment[E].YCS5 | 0.98774 | 0.98776 | -0.002 |
| recruitment[E].YCS6 | 0.32931 | 0.32932 | -0.001 |
| recruitment[E].YCS7 | 0.44722 | 0.44723 | -0.001 |
| recruitment[E].YCS8 | 0.26556 | 0.26556 | -0.001 |
| recruitment[E].YCS9 | 0.43418 | 0.43418 | 0.000 |
| recruitment[E].YCS10 | 0.48804 | 0.48804 | -0.001 |
| recruitment[E].YCS11 | 0.39569 | 0.39570 | -0.000 |
| recruitment[E].YCS12 | 0.21791 | 0.21791 | -0.000 |
| recruitment[E].YCS13 | 1.03641 | 1.03640 | 0.001 |
| recruitment[E].YCS14 | 0.95892 | 0.95891 | 0.001 |
| recruitment[E].YCS15 | 0.42899 | 0.42899 | -0.001 |
| recruitment[E].YCS16 | 0.13810 | 0.13810 | -0.001 |
| recruitment[E].YCS17 | 0.37501 | 0.37500 | 0.002 |
| recruitment[E].YCS18 | 0.39166 | 0.39164 | 0.005 |
| recruitment[E].YCS19 | 0.38310 | 0.38310 | 0.000 |
| recruitment[E].YCS20 | 0.56286 | 0.56285 | 0.002 |
| recruitment[E].YCS21 | 0.26399 | 0.26399 | 0.000 |
| recruitment[E].YCS22 | 0.28447 | 0.28447 | 0.000 |
| recruitment[E].YCS23 | 0.45004 | 0.45003 | 0.001 |
| recruitment[E].YCS24 | 0.25308 | 0.25307 | 0.001 |
| recruitment[E].YCS25 | 0.06000 | 0.06000 | 0.000 |
| recruitment[E].YCS26 | 0.46220 | 0.46220 | 0.001 |
| recruitment[E].YCS27 | 0.16165 | 0.16165 | -0.001 |
| recruitment[E].YCS28 | 0.26690 | 0.26689 | 0.003 |
| recruitment[E].YCS29 | 0.50038 | 0.50038 | 0.000 |
| recruitment[E].YCS30 | 0.52003 | 0.52003 | 0.001 |
| recruitment[E].YCS31 | 0.50883 | 0.50882 | 0.000 |
| recruitment[E].YCS32 | 0.60056 | 0.60055 | 0.001 |
| recruitment[E].YCS33 | 0.52215 | 0.52215 | 0.000 |
| recruitment[E].YCS34 | 0.37302 | 0.37300 | 0.003 |
| recruitment[E].YCS35 | 0.52681 | 0.52681 | -0.000 |
| recruitment[E].YCS36 | 0.15864 | 0.15864 | 0.001 |
| recruitment[E].YCS37 | 0.66058 | 0.66058 | 0.000 |
| recruitment[E].YCS38 | 0.15599 | 0.15600 | -0.001 |
| recruitment[E].YCS39 | 0.18584 | 0.18584 | -0.001 |
| recruitment[E].YCS40 | 0.73063 | 0.73062 | 0.001 |
| recruitment[E].YCS41 | 0.73906 | 0.73900 | 0.008 |
| recruitment[E].YCS42 | 1.19514 | 1.19515 | -0.001 |
| recruitment[W].YCS1 | 0.45702 | 0.45702 | -0.000 |
| recruitment[W].YCS2 | 0.82218 | 0.82218 | 0.000 |
| recruitment[W].YCS3 | 0.67001 | 0.67000 | 0.000 |
| recruitment[W].YCS4 | 0.65390 | 0.65390 | 0.000 |
| recruitment[W].YCS5 | 0.46590 | 0.46590 | 0.001 |
| recruitment[W].YCS6 | 0.51512 | 0.51512 | -0.000 |
| recruitment[W].YCS7 | 0.57824 | 0.57824 | 0.000 |
| recruitment[W].YCS8 | 0.47328 | 0.47328 | 0.001 |
| recruitment[W].YCS9 | 0.87191 | 0.87192 | -0.002 |
| recruitment[W].YCS10 | 0.83644 | 0.83646 | -0.003 |
| recruitment[W].YCS11 | 0.32024 | 0.32024 | -0.002 |
| recruitment[W].YCS12 | 0.16497 | 0.16497 | 0.001 |
| recruitment[W].YCS13 | 1.47554 | 1.47555 | -0.001 |
| recruitment[W].YCS14 | 0.77274 | 0.77276 | -0.002 |
| recruitment[W].YCS15 | 0.08135 | 0.08134 | 0.000 |
| recruitment[W].YCS16 | 0.08158 | 0.08158 | 0.001 |
| recruitment[W].YCS17 | 0.89280 | 0.89280 | 0.000 |
| recruitment[W].YCS18 | 1.26777 | 1.26778 | -0.001 |
| recruitment[W].YCS19 | 0.37722 | 0.37722 | 0.000 |
| recruitment[W].YCS20 | 0.95940 | 0.95939 | 0.000 |
| recruitment[W].YCS21 | 0.22113 | 0.22113 | 0.001 |
| recruitment[W].YCS22 | 0.19718 | 0.19718 | 0.001 |
| recruitment[W].YCS23 | 0.23794 | 0.23795 | -0.003 |
| recruitment[W].YCS24 | 0.20291 | 0.20292 | -0.002 |
| recruitment[W].YCS25 | 0.06000 | 0.06000 | 0.000 |
| recruitment[W].YCS26 | 0.37304 | 0.37304 | -0.002 |
| recruitment[W].YCS27 | 0.09548 | 0.09548 | -0.001 |
| recruitment[W].YCS28 | 0.79558 | 0.79558 | -0.000 |
| recruitment[W].YCS29 | 0.46516 | 0.46517 | -0.001 |
| recruitment[W].YCS30 | 0.51662 | 0.51662 | -0.001 |
| recruitment[W].YCS31 | 0.51126 | 0.51126 | -0.000 |
| recruitment[W].YCS32 | 0.75544 | 0.75544 | 0.000 |
| recruitment[W].YCS33 | 0.63892 | 0.63891 | 0.001 |
| recruitment[W].YCS34 | 0.61686 | 0.61686 | -0.001 |
| recruitment[W].YCS35 | 0.57841 | 0.57841 | 0.001 |
| recruitment[W].YCS36 | 0.14547 | 0.14547 | -0.001 |
| recruitment[W].YCS37 | 0.97479 | 0.97478 | 0.001 |
| recruitment[W].YCS38 | 0.16016 | 0.16016 | 0.002 |
| recruitment[W].YCS39 | 0.24444 | 0.24444 | 0.001 |
| recruitment[W].YCS40 | 2.19661 | 2.19657 | 0.002 |
| recruitment[W].YCS41 | 2.15201 | 2.15204 | -0.001 |
| recruitment[W].YCS42 | 1.19538 | 1.19539 | -0.001 |
| migration[Whome].rates_all1 | 0.32784 | 0.32783 | 0.003 |
| migration[Whome].rates_all2 | 0.30780 | 0.30778 | 0.006 |
| migration[Whome].rates_all3 | 0.47624 | 0.47620 | 0.007 |
| migration[Whome].rates_all4 | 0.14184 | 0.14184 | 0.001 |
| migration[Whome].rates_all5 | 0.46851 | 0.46836 | 0.033 |
| migration[Whome].rates_all6 | 0.74978 | 0.75026 | -0.064 |
| migration[Whome].rates_all7 | 0.79469 | 0.78841 | 0.790 |
| migration[Whome].rates_all8 | 1.00000 | 1.00000 | 0.000 |
| migration[Espmg].rates_all1 | 0.00566 | 0.00566 | 0.002 |
| migration[Espmg].rates_all2 | 0.16021 | 0.16021 | 0.002 |
| migration[Espmg].rates_all3 | 0.32412 | 0.32411 | 0.002 |
| migration[Espmg].rates_all4 | 0.43124 | 0.43123 | 0.002 |
| migration[Espmg].rates_all5 | 0.38546 | 0.38546 | 0.002 |
| migration[Espmg].rates_all6 | 0.46536 | 0.46535 | 0.002 |
| migration[Espmg].rates_all7 | 0.59902 | 0.59902 | 0.001 |
| migration[Espmg].rates_all8 | 0.60778 | 0.60778 | 0.001 |
| migration[Wspmg].rates_all1 | 0.10614 | 0.10614 | 0.000 |
| migration[Wspmg].rates_all2 | 0.28774 | 0.28774 | -0.001 |
| migration[Wspmg].rates_all3 | 0.27076 | 0.27076 | 0.000 |
| migration[Wspmg].rates_all4 | 0.45525 | 0.45525 | 0.000 |
| migration[Wspmg].rates_all5 | 0.48465 | 0.48466 | -0.001 |
| migration[Wspmg].rates_all6 | 0.52713 | 0.52711 | 0.005 |
| migration[Wspmg].rates_all7 | 0.66056 | 0.66062 | -0.009 |
| migration[Wspmg].rates_all8 | 0.59628 | 0.59627 | 0.001 |
| selectivity[Enspsl].all1 | 3.56717 | 3.56716 | 0.000 |
| selectivity[Enspsl].all2 | 1.22109 | 1.22108 | 0.001 |
| selectivity[Enspsl].all3 | 15.71130 | 15.71370 | -0.015 |
| selectivity[Wnspsl].all1 | 5.34113 | 5.34117 | -0.001 |
| selectivity[Wnspsl].all2 | 2.83932 | 2.83934 | -0.001 |
| selectivity[Wnspsl].all3 | 13.37880 | 13.37890 | -0.001 |
| selectivity[Espsl].all1 | 10.87880 | 10.87880 | 0.000 |
| selectivity[Espsl].all2 | 11.67780 | 11.67750 | 0.003 |
| selectivity[Espsl].all3 | 3.98159 | 3.98165 | -0.002 |
| selectivity[CRsl].all1 | 1.00000 | 1.00000 | 0.000 |
| selectivity[CRsl].all2 | 1.00000 | 1.00000 | 0.000 |
| selectivity[CRsl].all3 | 9.30026 | 9.30042 | -0.002 |
| selectivity[SAsl].all1 | 14.25200 | 14.25230 | -0.002 |
| selectivity[SAsl].all2 | 8.75543 | 8.75558 | -0.002 |
| selectivity[SAsl].all3 | 1.31548 | 1.31519 | 0.022 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | cppad_casal_flags_on | cppad_casal_flags_off | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
| catchability[CSacous].q | 0.427 | 0.427 | 0.431 | 0.431 | 0.431 | 0.428 | 0.427 | 0.428 |
| catchability[WCacous].q | 0.313 | 0.313 | 0.300 | 0.300 | 0.300 | 0.312 | 0.313 | 0.312 |
| catchability[CRsum].q | 0.068 | 0.068 | 0.074 | 0.074 | 0.074 | 0.068 | 0.068 | 0.068 |
| catchability[SAsum].q | 0.067 | 0.067 | 0.059 | 0.059 | 0.059 | 0.067 | 0.067 | 0.067 |
| catchability[SAaut].q | 0.076 | 0.076 | 0.067 | 0.067 | 0.067 | 0.076 | 0.076 | 0.076 |
| observation[CRsumbio].process_error | 0.141 | 0.141 | 0.140 | 0.140 | 0.140 | 0.141 | 0.141 | 0.141 |
| observation[SAsumbio].process_error | 0.424 | 0.424 | 0.431 | 0.431 | 0.431 | 0.424 | 0.424 | 0.424 |
| process[recruit_E].b0 | 548395.000 | 548395.000 | 555125.000 | 555125.000 | 555125.000 | 547497.000 | 548395.000 | 547497.000 |
| process[recruit_W].b0 | 1082670.000 | 1082670.000 | 1133680.000 | 1133680.000 | 1133680.000 | 1083360.000 | 1082670.000 | 1083360.000 |
| process[Instant_mortality].m{west.sa} | 0.313 | 0.313 | 0.296 | 0.296 | 0.296 | 0.313 | 0.313 | 0.313 |
| time_varying[shifted_mu].a | -0.229 | -0.229 | -0.217 | -0.217 | -0.217 | -0.230 | -0.229 | -0.230 |
| process[recruit_E].ycs_values{1975} | 0.445 | 0.445 | 0.448 | 0.448 | 0.448 | 0.446 | 0.445 | 0.446 |
| process[recruit_E].ycs_values{1976} | 0.729 | 0.729 | 0.727 | 0.727 | 0.727 | 0.731 | 0.729 | 0.731 |
| process[recruit_E].ycs_values{1977} | 0.792 | 0.792 | 0.785 | 0.785 | 0.785 | 0.793 | 0.792 | 0.793 |
| process[recruit_E].ycs_values{1978} | 1.386 | 1.386 | 1.360 | 1.360 | 1.360 | 1.388 | 1.386 | 1.388 |
| process[recruit_E].ycs_values{1979} | 1.003 | 1.003 | 0.988 | 0.988 | 0.988 | 1.004 | 1.003 | 1.004 |
| process[recruit_E].ycs_values{1980} | 0.334 | 0.334 | 0.329 | 0.329 | 0.329 | 0.335 | 0.334 | 0.335 |
| process[recruit_E].ycs_values{1981} | 0.455 | 0.455 | 0.447 | 0.447 | 0.447 | 0.455 | 0.455 | 0.455 |
| process[recruit_E].ycs_values{1982} | 0.270 | 0.270 | 0.266 | 0.266 | 0.266 | 0.270 | 0.270 | 0.270 |
| process[recruit_E].ycs_values{1983} | 0.441 | 0.441 | 0.434 | 0.434 | 0.434 | 0.441 | 0.441 | 0.441 |
| process[recruit_E].ycs_values{1984} | 0.494 | 0.494 | 0.488 | 0.488 | 0.488 | 0.494 | 0.494 | 0.494 |
| process[recruit_E].ycs_values{1985} | 0.400 | 0.400 | 0.396 | 0.396 | 0.396 | 0.400 | 0.400 | 0.400 |
| process[recruit_E].ycs_values{1986} | 0.220 | 0.220 | 0.218 | 0.218 | 0.218 | 0.220 | 0.220 | 0.220 |
| process[recruit_E].ycs_values{1987} | 1.041 | 1.041 | 1.036 | 1.036 | 1.036 | 1.041 | 1.041 | 1.041 |
| process[recruit_E].ycs_values{1988} | 0.963 | 0.963 | 0.959 | 0.959 | 0.959 | 0.963 | 0.963 | 0.963 |
| process[recruit_E].ycs_values{1989} | 0.431 | 0.431 | 0.429 | 0.429 | 0.429 | 0.431 | 0.431 | 0.431 |
| process[recruit_E].ycs_values{1990} | 0.138 | 0.138 | 0.138 | 0.138 | 0.138 | 0.138 | 0.138 | 0.138 |
| process[recruit_E].ycs_values{1991} | 0.374 | 0.374 | 0.375 | 0.375 | 0.375 | 0.373 | 0.374 | 0.373 |
| process[recruit_E].ycs_values{1992} | 0.389 | 0.389 | 0.392 | 0.392 | 0.392 | 0.388 | 0.389 | 0.388 |
| process[recruit_E].ycs_values{1993} | 0.380 | 0.380 | 0.383 | 0.383 | 0.383 | 0.380 | 0.380 | 0.380 |
| process[recruit_E].ycs_values{1994} | 0.558 | 0.558 | 0.563 | 0.563 | 0.563 | 0.557 | 0.558 | 0.557 |
| process[recruit_E].ycs_values{1995} | 0.262 | 0.262 | 0.264 | 0.264 | 0.264 | 0.262 | 0.262 | 0.262 |
| process[recruit_E].ycs_values{1996} | 0.283 | 0.283 | 0.284 | 0.284 | 0.284 | 0.282 | 0.283 | 0.282 |
| process[recruit_E].ycs_values{1997} | 0.448 | 0.448 | 0.450 | 0.450 | 0.450 | 0.448 | 0.448 | 0.448 |
| process[recruit_E].ycs_values{1998} | 0.253 | 0.253 | 0.253 | 0.253 | 0.253 | 0.252 | 0.253 | 0.252 |
| process[recruit_E].ycs_values{1999} | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 |
| process[recruit_E].ycs_values{2000} | 0.460 | 0.460 | 0.462 | 0.462 | 0.462 | 0.460 | 0.460 | 0.460 |
| process[recruit_E].ycs_values{2001} | 0.161 | 0.161 | 0.162 | 0.162 | 0.162 | 0.161 | 0.161 | 0.161 |
| process[recruit_E].ycs_values{2002} | 0.266 | 0.266 | 0.267 | 0.267 | 0.267 | 0.266 | 0.266 | 0.266 |
| process[recruit_E].ycs_values{2003} | 0.500 | 0.500 | 0.500 | 0.500 | 0.500 | 0.499 | 0.500 | 0.499 |
| process[recruit_E].ycs_values{2004} | 0.521 | 0.521 | 0.520 | 0.520 | 0.520 | 0.520 | 0.521 | 0.520 |
| process[recruit_E].ycs_values{2005} | 0.508 | 0.508 | 0.509 | 0.509 | 0.509 | 0.508 | 0.508 | 0.508 |
| process[recruit_E].ycs_values{2006} | 0.600 | 0.600 | 0.601 | 0.601 | 0.601 | 0.600 | 0.600 | 0.600 |
| process[recruit_E].ycs_values{2007} | 0.521 | 0.521 | 0.522 | 0.522 | 0.522 | 0.521 | 0.521 | 0.521 |
| process[recruit_E].ycs_values{2008} | 0.371 | 0.371 | 0.373 | 0.373 | 0.373 | 0.370 | 0.371 | 0.370 |
| process[recruit_E].ycs_values{2009} | 0.528 | 0.528 | 0.527 | 0.527 | 0.527 | 0.528 | 0.528 | 0.528 |
| process[recruit_E].ycs_values{2010} | 0.157 | 0.157 | 0.159 | 0.159 | 0.159 | 0.157 | 0.157 | 0.157 |
| process[recruit_E].ycs_values{2011} | 0.660 | 0.660 | 0.661 | 0.661 | 0.661 | 0.660 | 0.660 | 0.660 |
| process[recruit_E].ycs_values{2012} | 0.156 | 0.156 | 0.156 | 0.156 | 0.156 | 0.156 | 0.156 | 0.156 |
| process[recruit_E].ycs_values{2013} | 0.185 | 0.185 | 0.186 | 0.186 | 0.186 | 0.185 | 0.185 | 0.185 |
| process[recruit_E].ycs_values{2014} | 0.728 | 0.728 | 0.731 | 0.731 | 0.731 | 0.728 | 0.728 | 0.728 |
| process[recruit_E].ycs_values{2015} | 0.756 | 0.756 | 0.739 | 0.739 | 0.739 | 0.752 | 0.756 | 0.752 |
| process[recruit_E].ycs_values{2016} | 1.189 | 1.189 | 1.195 | 1.195 | 1.195 | 1.189 | 1.189 | 1.189 |
| process[recruit_W].ycs_values{1975} | 0.459 | 0.459 | 0.457 | 0.457 | 0.457 | 0.459 | 0.459 | 0.459 |
| process[recruit_W].ycs_values{1976} | 0.814 | 0.814 | 0.822 | 0.822 | 0.822 | 0.814 | 0.814 | 0.814 |
| process[recruit_W].ycs_values{1977} | 0.685 | 0.685 | 0.670 | 0.670 | 0.670 | 0.685 | 0.685 | 0.685 |
| process[recruit_W].ycs_values{1978} | 0.669 | 0.669 | 0.654 | 0.654 | 0.654 | 0.669 | 0.669 | 0.669 |
| process[recruit_W].ycs_values{1979} | 0.473 | 0.473 | 0.466 | 0.466 | 0.466 | 0.473 | 0.473 | 0.473 |
| process[recruit_W].ycs_values{1980} | 0.521 | 0.521 | 0.515 | 0.515 | 0.515 | 0.521 | 0.521 | 0.521 |
| process[recruit_W].ycs_values{1981} | 0.583 | 0.583 | 0.578 | 0.578 | 0.578 | 0.583 | 0.583 | 0.583 |
| process[recruit_W].ycs_values{1982} | 0.475 | 0.475 | 0.473 | 0.473 | 0.473 | 0.474 | 0.475 | 0.474 |
| process[recruit_W].ycs_values{1983} | 0.873 | 0.873 | 0.872 | 0.872 | 0.872 | 0.874 | 0.873 | 0.874 |
| process[recruit_W].ycs_values{1984} | 0.836 | 0.836 | 0.836 | 0.836 | 0.836 | 0.837 | 0.836 | 0.837 |
| process[recruit_W].ycs_values{1985} | 0.319 | 0.319 | 0.320 | 0.320 | 0.320 | 0.320 | 0.319 | 0.320 |
| process[recruit_W].ycs_values{1986} | 0.165 | 0.165 | 0.165 | 0.165 | 0.165 | 0.165 | 0.165 | 0.165 |
| process[recruit_W].ycs_values{1987} | 1.480 | 1.480 | 1.476 | 1.476 | 1.476 | 1.481 | 1.480 | 1.481 |
| process[recruit_W].ycs_values{1988} | 0.775 | 0.775 | 0.773 | 0.773 | 0.773 | 0.775 | 0.775 | 0.775 |
| process[recruit_W].ycs_values{1989} | 0.081 | 0.081 | 0.081 | 0.081 | 0.081 | 0.081 | 0.081 | 0.081 |
| process[recruit_W].ycs_values{1990} | 0.082 | 0.082 | 0.082 | 0.082 | 0.082 | 0.082 | 0.082 | 0.082 |
| process[recruit_W].ycs_values{1991} | 0.892 | 0.892 | 0.893 | 0.893 | 0.893 | 0.892 | 0.892 | 0.892 |
| process[recruit_W].ycs_values{1992} | 1.268 | 1.268 | 1.268 | 1.268 | 1.268 | 1.268 | 1.268 | 1.268 |
| process[recruit_W].ycs_values{1993} | 0.377 | 0.377 | 0.377 | 0.377 | 0.377 | 0.376 | 0.377 | 0.376 |
| process[recruit_W].ycs_values{1994} | 0.956 | 0.956 | 0.959 | 0.959 | 0.959 | 0.956 | 0.956 | 0.956 |
| process[recruit_W].ycs_values{1995} | 0.220 | 0.220 | 0.221 | 0.221 | 0.221 | 0.220 | 0.220 | 0.220 |
| process[recruit_W].ycs_values{1996} | 0.196 | 0.196 | 0.197 | 0.197 | 0.197 | 0.196 | 0.196 | 0.196 |
| process[recruit_W].ycs_values{1997} | 0.236 | 0.236 | 0.238 | 0.238 | 0.238 | 0.237 | 0.236 | 0.237 |
| process[recruit_W].ycs_values{1998} | 0.200 | 0.200 | 0.203 | 0.203 | 0.203 | 0.201 | 0.200 | 0.201 |
| process[recruit_W].ycs_values{1999} | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 | 0.060 |
| process[recruit_W].ycs_values{2000} | 0.371 | 0.371 | 0.373 | 0.373 | 0.373 | 0.371 | 0.371 | 0.371 |
| process[recruit_W].ycs_values{2001} | 0.095 | 0.095 | 0.095 | 0.095 | 0.095 | 0.095 | 0.095 | 0.095 |
| process[recruit_W].ycs_values{2002} | 0.796 | 0.796 | 0.796 | 0.796 | 0.796 | 0.796 | 0.796 | 0.796 |
| process[recruit_W].ycs_values{2003} | 0.466 | 0.466 | 0.465 | 0.465 | 0.465 | 0.466 | 0.466 | 0.466 |
| process[recruit_W].ycs_values{2004} | 0.518 | 0.518 | 0.517 | 0.517 | 0.517 | 0.518 | 0.518 | 0.518 |
| process[recruit_W].ycs_values{2005} | 0.513 | 0.513 | 0.511 | 0.511 | 0.511 | 0.513 | 0.513 | 0.513 |
| process[recruit_W].ycs_values{2006} | 0.755 | 0.755 | 0.755 | 0.755 | 0.755 | 0.755 | 0.755 | 0.755 |
| process[recruit_W].ycs_values{2007} | 0.637 | 0.637 | 0.639 | 0.639 | 0.639 | 0.637 | 0.637 | 0.637 |
| process[recruit_W].ycs_values{2008} | 0.616 | 0.616 | 0.617 | 0.617 | 0.617 | 0.616 | 0.616 | 0.616 |
| process[recruit_W].ycs_values{2009} | 0.573 | 0.573 | 0.578 | 0.578 | 0.578 | 0.573 | 0.573 | 0.573 |
| process[recruit_W].ycs_values{2010} | 0.146 | 0.146 | 0.145 | 0.145 | 0.145 | 0.146 | 0.146 | 0.146 |
| process[recruit_W].ycs_values{2011} | 0.967 | 0.967 | 0.975 | 0.975 | 0.975 | 0.967 | 0.967 | 0.967 |
| process[recruit_W].ycs_values{2012} | 0.159 | 0.159 | 0.160 | 0.160 | 0.160 | 0.159 | 0.159 | 0.159 |
| process[recruit_W].ycs_values{2013} | 0.244 | 0.244 | 0.244 | 0.244 | 0.244 | 0.244 | 0.244 | 0.244 |
| process[recruit_W].ycs_values{2014} | 2.187 | 2.187 | 2.197 | 2.197 | 2.197 | 2.185 | 2.187 | 2.185 |
| process[recruit_W].ycs_values{2015} | 2.148 | 2.148 | 2.152 | 2.152 | 2.152 | 2.150 | 2.148 | 2.150 |
| process[recruit_W].ycs_values{2016} | 1.189 | 1.189 | 1.195 | 1.195 | 1.195 | 1.190 | 1.189 | 1.190 |
| selectivity[sel_Whome].v{1} | 0.322 | 0.322 | 0.328 | 0.328 | 0.328 | 0.321 | 0.322 | 0.321 |
| selectivity[sel_Whome].v{2} | 0.285 | 0.285 | 0.308 | 0.308 | 0.308 | 0.284 | 0.285 | 0.284 |
| selectivity[sel_Whome].v{3} | 0.460 | 0.460 | 0.476 | 0.476 | 0.476 | 0.458 | 0.460 | 0.458 |
| selectivity[sel_Whome].v{4} | 0.135 | 0.135 | 0.142 | 0.142 | 0.142 | 0.135 | 0.135 | 0.135 |
| selectivity[sel_Whome].v{5} | 0.438 | 0.438 | 0.468 | 0.468 | 0.468 | 0.432 | 0.438 | 0.432 |
| selectivity[sel_Whome].v{6} | 0.708 | 0.708 | 0.750 | 0.750 | 0.750 | 0.719 | 0.708 | 0.719 |
| selectivity[sel_Whome].v{7} | 1.000 | 1.000 | 0.788 | 0.788 | 0.788 | 0.760 | 1.000 | 0.760 |
| selectivity[sel_Espmg].v{1} | 0.006 | 0.006 | 0.006 | 0.006 | 0.006 | 0.006 | 0.006 | 0.006 |
| selectivity[sel_Espmg].v{2} | 0.159 | 0.159 | 0.160 | 0.160 | 0.160 | 0.159 | 0.159 | 0.159 |
| selectivity[sel_Espmg].v{3} | 0.321 | 0.321 | 0.324 | 0.324 | 0.324 | 0.321 | 0.321 | 0.321 |
| selectivity[sel_Espmg].v{4} | 0.425 | 0.425 | 0.431 | 0.431 | 0.431 | 0.425 | 0.425 | 0.425 |
| selectivity[sel_Espmg].v{5} | 0.380 | 0.380 | 0.385 | 0.385 | 0.385 | 0.379 | 0.380 | 0.379 |
| selectivity[sel_Espmg].v{6} | 0.459 | 0.459 | 0.465 | 0.465 | 0.465 | 0.458 | 0.459 | 0.458 |
| selectivity[sel_Espmg].v{7} | 0.591 | 0.591 | 0.599 | 0.599 | 0.599 | 0.590 | 0.591 | 0.590 |
| selectivity[sel_Espmg].v{8} | 0.611 | 0.611 | 0.608 | 0.608 | 0.608 | 0.611 | 0.611 | 0.611 |
| selectivity[sel_Wspmg].v{1} | 0.106 | 0.106 | 0.106 | 0.106 | 0.106 | 0.106 | 0.106 | 0.106 |
| selectivity[sel_Wspmg].v{2} | 0.291 | 0.291 | 0.288 | 0.288 | 0.288 | 0.291 | 0.291 | 0.291 |
| selectivity[sel_Wspmg].v{3} | 0.271 | 0.271 | 0.271 | 0.271 | 0.271 | 0.271 | 0.271 | 0.271 |
| selectivity[sel_Wspmg].v{4} | 0.455 | 0.455 | 0.455 | 0.455 | 0.455 | 0.455 | 0.455 | 0.455 |
| selectivity[sel_Wspmg].v{5} | 0.484 | 0.484 | 0.485 | 0.485 | 0.485 | 0.484 | 0.484 | 0.484 |
| selectivity[sel_Wspmg].v{6} | 0.525 | 0.525 | 0.527 | 0.527 | 0.527 | 0.524 | 0.525 | 0.524 |
| selectivity[sel_Wspmg].v{7} | 0.653 | 0.653 | 0.661 | 0.661 | 0.661 | 0.656 | 0.653 | 0.656 |
| selectivity[sel_Wspmg].v{8} | 0.602 | 0.602 | 0.596 | 0.596 | 0.596 | 0.601 | 0.602 | 0.601 |
| selectivity[Enspsl].mu | 3.573 | 3.573 | 3.567 | 3.567 | 3.567 | 3.572 | 3.573 | 3.572 |
| selectivity[Enspsl].sigma_l | 1.222 | 1.222 | 1.221 | 1.221 | 1.221 | 1.222 | 1.222 | 1.222 |
| selectivity[Enspsl].sigma_r | 50.000 | 50.000 | 15.714 | 15.714 | 15.714 | 50.000 | 50.000 | 50.000 |
| selectivity[Wnspsl].mu | 5.328 | 5.328 | 5.341 | 5.341 | 5.341 | 5.330 | 5.328 | 5.330 |
| selectivity[Wnspsl].sigma_l | 2.778 | 2.778 | 2.839 | 2.839 | 2.839 | 2.778 | 2.778 | 2.778 |
| selectivity[Wnspsl].sigma_r | 50.000 | 50.000 | 13.379 | 13.379 | 13.379 | 50.000 | 49.989 | 50.000 |
| selectivity[Espsl].mu | 11.257 | 11.257 | 10.879 | 10.879 | 10.879 | 11.255 | 11.257 | 11.255 |
| selectivity[Espsl].sigma_l | 10.867 | 10.867 | 11.678 | 11.678 | 11.678 | 10.859 | 10.867 | 10.859 |
| selectivity[Espsl].sigma_r | 4.026 | 4.026 | 3.982 | 3.982 | 3.982 | 4.029 | 4.026 | 4.029 |
| selectivity[CRsl].mu | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
| selectivity[CRsl].sigma_l | 46.484 | 46.481 | 45.986 | 25.500 | 25.500 | 46.483 | 46.483 | 46.483 |
| selectivity[CRsl].sigma_r | 10.093 | 10.093 | 9.300 | 9.300 | 9.300 | 10.088 | 10.093 | 10.088 |
| selectivity[SAsl].mu | 14.868 | 14.868 | 14.252 | 14.252 | 14.252 | 14.865 | 14.868 | 14.865 |
| selectivity[SAsl].sigma_l | 8.695 | 8.695 | 8.756 | 8.756 | 8.756 | 8.693 | 8.695 | 8.693 |
| selectivity[SAsl].sigma_r | 1.000 | 1.000 | 1.315 | 1.315 | 1.315 | 1.000 | 1.000 | 1.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | cppad_casal_flags_on | cppad_casal_flags_off | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
| catchability[CSacous].q | 0.000 | 0.000 | -0.918 | -0.918 | -0.918 | -0.145 | 0.000 | -0.145 |
| catchability[WCacous].q | 0.000 | 0.000 | 4.027 | 4.027 | 4.027 | 0.128 | 0.000 | 0.128 |
| catchability[CRsum].q | 0.000 | 0.000 | -8.765 | -8.765 | -8.765 | 0.298 | -0.000 | 0.298 |
| catchability[SAsum].q | 0.000 | 0.000 | 11.797 | 11.797 | 11.797 | 0.172 | 0.000 | 0.172 |
| catchability[SAaut].q | 0.000 | 0.000 | 11.363 | 11.363 | 11.363 | 0.188 | 0.000 | 0.188 |
| observation[CRsumbio].process_error | 0.000 | 0.000 | 0.328 | 0.328 | 0.328 | 0.035 | 0.000 | 0.035 |
| observation[SAsumbio].process_error | 0.000 | -0.000 | -1.645 | -1.645 | -1.645 | -0.040 | 0.000 | -0.040 |
| process[recruit_E].b0 | 0.000 | 0.000 | -1.227 | -1.227 | -1.227 | 0.164 | 0.000 | 0.164 |
| process[recruit_W].b0 | 0.000 | 0.000 | -4.712 | -4.712 | -4.712 | -0.064 | 0.000 | -0.064 |
| process[Instant_mortality].m{west.sa} | 0.000 | 0.000 | 5.349 | 5.349 | 5.349 | -0.070 | 0.000 | -0.070 |
| time_varying[shifted_mu].a | 0.000 | 0.000 | 5.135 | 5.135 | 5.135 | -0.166 | 0.000 | -0.166 |
| process[recruit_E].ycs_values{1975} | 0.000 | 0.000 | -0.549 | -0.549 | -0.549 | -0.117 | 0.001 | -0.117 |
| process[recruit_E].ycs_values{1976} | 0.000 | 0.000 | 0.355 | 0.355 | 0.355 | -0.156 | -0.001 | -0.156 |
| process[recruit_E].ycs_values{1977} | 0.000 | 0.000 | 0.982 | 0.982 | 0.982 | -0.127 | 0.001 | -0.127 |
| process[recruit_E].ycs_values{1978} | 0.000 | 0.001 | 1.907 | 1.907 | 1.907 | -0.131 | 0.001 | -0.132 |
| process[recruit_E].ycs_values{1979} | 0.000 | 0.000 | 1.485 | 1.485 | 1.485 | -0.107 | 0.000 | -0.107 |
| process[recruit_E].ycs_values{1980} | 0.000 | 0.000 | 1.512 | 1.512 | 1.512 | -0.073 | 0.000 | -0.073 |
| process[recruit_E].ycs_values{1981} | 0.000 | 0.000 | 1.712 | 1.712 | 1.712 | -0.072 | 0.000 | -0.072 |
| process[recruit_E].ycs_values{1982} | 0.000 | 0.000 | 1.551 | 1.551 | 1.551 | -0.055 | 0.000 | -0.055 |
| process[recruit_E].ycs_values{1983} | 0.000 | 0.000 | 1.559 | 1.559 | 1.559 | 0.013 | 0.000 | 0.013 |
| process[recruit_E].ycs_values{1984} | 0.000 | 0.000 | 1.229 | 1.229 | 1.229 | -0.022 | 0.000 | -0.022 |
| process[recruit_E].ycs_values{1985} | 0.000 | 0.000 | 1.102 | 1.102 | 1.102 | -0.009 | 0.000 | -0.009 |
| process[recruit_E].ycs_values{1986} | 0.000 | 0.000 | 0.850 | 0.850 | 0.850 | -0.022 | -0.000 | -0.022 |
| process[recruit_E].ycs_values{1987} | 0.000 | 0.000 | 0.472 | 0.472 | 0.472 | 0.035 | 0.000 | 0.035 |
| process[recruit_E].ycs_values{1988} | 0.000 | 0.000 | 0.471 | 0.471 | 0.471 | 0.032 | -0.000 | 0.032 |
| process[recruit_E].ycs_values{1989} | 0.000 | 0.000 | 0.455 | 0.455 | 0.455 | -0.040 | 0.000 | -0.040 |
| process[recruit_E].ycs_values{1990} | 0.000 | 0.000 | -0.101 | -0.101 | -0.101 | -0.009 | 0.000 | -0.009 |
| process[recruit_E].ycs_values{1991} | 0.000 | 0.000 | -0.307 | -0.307 | -0.307 | 0.135 | 0.000 | 0.135 |
| process[recruit_E].ycs_values{1992} | 0.000 | 0.000 | -0.787 | -0.787 | -0.787 | 0.259 | -0.000 | 0.259 |
| process[recruit_E].ycs_values{1993} | 0.000 | 0.000 | -0.831 | -0.831 | -0.831 | 0.016 | 0.000 | 0.016 |
| process[recruit_E].ycs_values{1994} | 0.000 | 0.000 | -0.880 | -0.880 | -0.880 | 0.122 | -0.000 | 0.122 |
| process[recruit_E].ycs_values{1995} | 0.000 | 0.000 | -0.843 | -0.843 | -0.843 | -0.002 | 0.000 | -0.002 |
| process[recruit_E].ycs_values{1996} | 0.000 | 0.000 | -0.695 | -0.695 | -0.695 | 0.008 | 0.000 | 0.008 |
| process[recruit_E].ycs_values{1997} | 0.000 | 0.000 | -0.496 | -0.496 | -0.496 | 0.049 | 0.000 | 0.049 |
| process[recruit_E].ycs_values{1998} | 0.000 | 0.000 | -0.170 | -0.170 | -0.170 | 0.061 | 0.000 | 0.061 |
| process[recruit_E].ycs_values{1999} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| process[recruit_E].ycs_values{2000} | 0.000 | 0.000 | -0.449 | -0.449 | -0.449 | 0.057 | 0.000 | 0.057 |
| process[recruit_E].ycs_values{2001} | 0.000 | 0.000 | -0.489 | -0.489 | -0.489 | -0.007 | 0.000 | -0.007 |
| process[recruit_E].ycs_values{2002} | 0.000 | 0.000 | -0.294 | -0.294 | -0.294 | 0.191 | 0.000 | 0.191 |
| process[recruit_E].ycs_values{2003} | 0.000 | 0.000 | -0.159 | -0.159 | -0.159 | 0.031 | 0.000 | 0.031 |
| process[recruit_E].ycs_values{2004} | 0.000 | 0.000 | 0.096 | 0.096 | 0.096 | 0.043 | -0.000 | 0.043 |
| process[recruit_E].ycs_values{2005} | 0.000 | 0.000 | -0.233 | -0.233 | -0.233 | 0.021 | 0.000 | 0.021 |
| process[recruit_E].ycs_values{2006} | 0.000 | 0.000 | -0.070 | -0.070 | -0.070 | 0.046 | -0.000 | 0.046 |
| process[recruit_E].ycs_values{2007} | 0.000 | 0.000 | -0.245 | -0.245 | -0.245 | 0.014 | -0.000 | 0.014 |
| process[recruit_E].ycs_values{2008} | 0.000 | 0.000 | -0.500 | -0.500 | -0.500 | 0.184 | 0.000 | 0.184 |
| process[recruit_E].ycs_values{2009} | 0.000 | 0.000 | 0.206 | 0.206 | 0.206 | 0.007 | 0.000 | 0.007 |
| process[recruit_E].ycs_values{2010} | 0.000 | 0.000 | -1.074 | -1.074 | -1.074 | 0.032 | -0.001 | 0.032 |
| process[recruit_E].ycs_values{2011} | 0.000 | 0.000 | -0.017 | -0.017 | -0.017 | 0.028 | 0.000 | 0.028 |
| process[recruit_E].ycs_values{2012} | 0.000 | -0.001 | -0.294 | -0.294 | -0.294 | -0.031 | -0.001 | -0.031 |
| process[recruit_E].ycs_values{2013} | 0.000 | 0.000 | -0.355 | -0.355 | -0.355 | 0.002 | 0.000 | 0.002 |
| process[recruit_E].ycs_values{2014} | 0.000 | 0.000 | -0.299 | -0.299 | -0.299 | 0.049 | 0.000 | 0.049 |
| process[recruit_E].ycs_values{2015} | 0.000 | 0.000 | 2.230 | 2.230 | 2.230 | 0.469 | -0.002 | 0.469 |
| process[recruit_E].ycs_values{2016} | 0.000 | 0.000 | -0.529 | -0.529 | -0.529 | -0.045 | 0.000 | -0.045 |
| process[recruit_W].ycs_values{1975} | 0.000 | -0.000 | 0.365 | 0.365 | 0.365 | -0.006 | 0.001 | -0.005 |
| process[recruit_W].ycs_values{1976} | 0.000 | -0.000 | -0.978 | -0.978 | -0.978 | -0.014 | -0.001 | -0.014 |
| process[recruit_W].ycs_values{1977} | 0.000 | 0.000 | 2.210 | 2.210 | 2.210 | 0.031 | 0.000 | 0.031 |
| process[recruit_W].ycs_values{1978} | 0.000 | 0.000 | 2.311 | 2.311 | 2.311 | 0.048 | -0.000 | 0.048 |
| process[recruit_W].ycs_values{1979} | 0.000 | 0.000 | 1.517 | 1.517 | 1.517 | 0.067 | -0.000 | 0.067 |
| process[recruit_W].ycs_values{1980} | 0.000 | 0.000 | 1.061 | 1.061 | 1.061 | 0.023 | -0.000 | 0.023 |
| process[recruit_W].ycs_values{1981} | 0.000 | 0.000 | 0.892 | 0.892 | 0.892 | 0.027 | -0.000 | 0.027 |
| process[recruit_W].ycs_values{1982} | 0.000 | 0.000 | 0.284 | 0.284 | 0.284 | 0.047 | 0.000 | 0.047 |
| process[recruit_W].ycs_values{1983} | 0.000 | -0.000 | 0.133 | 0.133 | 0.133 | -0.076 | -0.000 | -0.076 |
| process[recruit_W].ycs_values{1984} | 0.000 | 0.000 | -0.016 | -0.016 | -0.016 | -0.125 | 0.000 | -0.125 |
| process[recruit_W].ycs_values{1985} | 0.000 | 0.000 | -0.257 | -0.257 | -0.257 | -0.103 | 0.000 | -0.103 |
| process[recruit_W].ycs_values{1986} | 0.000 | 0.000 | -0.021 | -0.021 | -0.021 | 0.055 | 0.000 | 0.055 |
| process[recruit_W].ycs_values{1987} | 0.000 | 0.000 | 0.305 | 0.305 | 0.305 | -0.040 | 0.000 | -0.039 |
| process[recruit_W].ycs_values{1988} | 0.000 | 0.000 | 0.229 | 0.229 | 0.229 | -0.099 | 0.000 | -0.099 |
| process[recruit_W].ycs_values{1989} | 0.000 | 0.000 | 0.160 | 0.160 | 0.160 | 0.003 | 0.000 | 0.003 |
| process[recruit_W].ycs_values{1990} | 0.000 | 0.000 | 0.304 | 0.304 | 0.304 | 0.037 | 0.000 | 0.037 |
| process[recruit_W].ycs_values{1991} | 0.000 | 0.000 | -0.093 | -0.093 | -0.093 | 0.009 | -0.000 | 0.009 |
| process[recruit_W].ycs_values{1992} | 0.000 | 0.000 | -0.017 | -0.017 | -0.017 | -0.021 | 0.000 | -0.021 |
| process[recruit_W].ycs_values{1993} | 0.000 | 0.000 | -0.185 | -0.185 | -0.185 | 0.011 | 0.000 | 0.011 |
| process[recruit_W].ycs_values{1994} | 0.000 | -0.000 | -0.377 | -0.377 | -0.377 | 0.023 | -0.000 | 0.023 |
| process[recruit_W].ycs_values{1995} | 0.000 | 0.000 | -0.392 | -0.392 | -0.392 | 0.054 | 0.000 | 0.054 |
| process[recruit_W].ycs_values{1996} | 0.000 | 0.000 | -0.440 | -0.440 | -0.440 | 0.028 | 0.000 | 0.028 |
| process[recruit_W].ycs_values{1997} | 0.000 | 0.000 | -0.643 | -0.643 | -0.643 | -0.147 | 0.000 | -0.147 |
| process[recruit_W].ycs_values{1998} | 0.000 | 0.000 | -1.251 | -1.251 | -1.251 | -0.099 | 0.000 | -0.099 |
| process[recruit_W].ycs_values{1999} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| process[recruit_W].ycs_values{2000} | 0.000 | 0.000 | -0.581 | -0.581 | -0.581 | -0.118 | 0.000 | -0.118 |
| process[recruit_W].ycs_values{2001} | 0.000 | 0.000 | -0.446 | -0.446 | -0.446 | -0.037 | 0.000 | -0.037 |
| process[recruit_W].ycs_values{2002} | 0.000 | 0.000 | -0.007 | -0.007 | -0.007 | -0.029 | 0.000 | -0.029 |
| process[recruit_W].ycs_values{2003} | 0.000 | -0.000 | 0.114 | 0.114 | 0.114 | -0.039 | -0.000 | -0.039 |
| process[recruit_W].ycs_values{2004} | 0.000 | 0.000 | 0.191 | 0.191 | 0.191 | -0.045 | 0.000 | -0.045 |
| process[recruit_W].ycs_values{2005} | 0.000 | -0.000 | 0.349 | 0.349 | 0.349 | -0.017 | -0.000 | -0.017 |
| process[recruit_W].ycs_values{2006} | 0.000 | 0.000 | -0.091 | -0.091 | -0.091 | -0.015 | 0.000 | -0.015 |
| process[recruit_W].ycs_values{2007} | 0.000 | 0.000 | -0.312 | -0.312 | -0.312 | 0.026 | 0.000 | 0.026 |
| process[recruit_W].ycs_values{2008} | 0.000 | 0.000 | -0.198 | -0.198 | -0.198 | -0.080 | -0.000 | -0.081 |
| process[recruit_W].ycs_values{2009} | 0.000 | -0.000 | -0.934 | -0.934 | -0.934 | 0.024 | -0.000 | 0.024 |
| process[recruit_W].ycs_values{2010} | 0.000 | -0.001 | 0.482 | 0.482 | 0.482 | -0.056 | -0.001 | -0.056 |
| process[recruit_W].ycs_values{2011} | 0.000 | 0.000 | -0.796 | -0.796 | -0.796 | 0.041 | 0.000 | 0.041 |
| process[recruit_W].ycs_values{2012} | 0.000 | 0.000 | -0.674 | -0.674 | -0.674 | 0.075 | 0.000 | 0.075 |
| process[recruit_W].ycs_values{2013} | 0.000 | 0.000 | -0.172 | -0.172 | -0.172 | 0.052 | 0.000 | 0.052 |
| process[recruit_W].ycs_values{2014} | 0.000 | 0.000 | -0.460 | -0.460 | -0.460 | 0.081 | 0.000 | 0.081 |
| process[recruit_W].ycs_values{2015} | 0.000 | 0.000 | -0.207 | -0.207 | -0.207 | -0.098 | 0.000 | -0.098 |
| process[recruit_W].ycs_values{2016} | 0.000 | 0.000 | -0.530 | -0.530 | -0.530 | -0.045 | 0.000 | -0.045 |
| selectivity[sel_Whome].v{1} | 0.000 | 0.000 | -1.833 | -1.833 | -1.833 | 0.177 | 0.000 | 0.177 |
| selectivity[sel_Whome].v{2} | 0.000 | 0.000 | -8.027 | -8.027 | -8.027 | 0.370 | -0.000 | 0.370 |
| selectivity[sel_Whome].v{3} | 0.000 | -0.000 | -3.584 | -3.584 | -3.584 | 0.429 | -0.000 | 0.429 |
| selectivity[sel_Whome].v{4} | 0.000 | 0.001 | -4.690 | -4.690 | -4.690 | 0.341 | -0.004 | 0.341 |
| selectivity[sel_Whome].v{5} | 0.000 | -0.000 | -6.974 | -6.974 | -6.974 | 1.401 | 0.001 | 1.401 |
| selectivity[sel_Whome].v{6} | 0.000 | -0.001 | -5.942 | -5.942 | -5.942 | -1.514 | -0.005 | -1.514 |
| selectivity[sel_Whome].v{7} | 0.000 | -0.004 | 21.145 | 21.145 | 21.145 | 24.025 | -0.013 | 24.025 |
| selectivity[sel_Espmg].v{1} | 0.000 | 0.000 | -0.332 | -0.332 | -0.332 | 0.080 | 0.000 | 0.080 |
| selectivity[sel_Espmg].v{2} | 0.000 | 0.000 | -0.683 | -0.683 | -0.683 | 0.073 | 0.000 | 0.073 |
| selectivity[sel_Espmg].v{3} | 0.000 | 0.000 | -1.028 | -1.028 | -1.028 | 0.078 | 0.000 | 0.078 |
| selectivity[sel_Espmg].v{4} | 0.000 | 0.000 | -1.354 | -1.354 | -1.354 | 0.079 | 0.000 | 0.079 |
| selectivity[sel_Espmg].v{5} | 0.000 | 0.000 | -1.563 | -1.563 | -1.563 | 0.069 | 0.000 | 0.069 |
| selectivity[sel_Espmg].v{6} | 0.000 | 0.000 | -1.436 | -1.436 | -1.436 | 0.063 | 0.000 | 0.063 |
| selectivity[sel_Espmg].v{7} | 0.000 | 0.000 | -1.389 | -1.389 | -1.389 | 0.062 | -0.000 | 0.062 |
| selectivity[sel_Espmg].v{8} | 0.000 | 0.000 | 0.528 | 0.528 | 0.528 | 0.060 | 0.000 | 0.060 |
| selectivity[sel_Wspmg].v{1} | 0.000 | 0.000 | -0.552 | -0.552 | -0.552 | 0.033 | 0.001 | 0.033 |
| selectivity[sel_Wspmg].v{2} | 0.000 | 0.000 | 1.242 | 1.242 | 1.242 | -0.010 | 0.000 | -0.010 |
| selectivity[sel_Wspmg].v{3} | 0.000 | 0.000 | -0.029 | -0.029 | -0.029 | 0.008 | 0.000 | 0.008 |
| selectivity[sel_Wspmg].v{4} | 0.000 | 0.000 | 0.004 | 0.004 | 0.004 | 0.017 | 0.000 | 0.017 |
| selectivity[sel_Wspmg].v{5} | 0.000 | 0.000 | -0.092 | -0.092 | -0.092 | -0.026 | 0.000 | -0.026 |
| selectivity[sel_Wspmg].v{6} | 0.000 | 0.000 | -0.409 | -0.409 | -0.409 | 0.187 | 0.000 | 0.187 |
| selectivity[sel_Wspmg].v{7} | 0.000 | 0.000 | -1.170 | -1.170 | -1.170 | -0.449 | 0.000 | -0.449 |
| selectivity[sel_Wspmg].v{8} | 0.000 | 0.000 | 0.875 | 0.875 | 0.875 | 0.087 | 0.000 | 0.087 |
| selectivity[Enspsl].mu | 0.000 | 0.000 | 0.168 | 0.168 | 0.168 | 0.025 | 0.000 | 0.025 |
| selectivity[Enspsl].sigma_l | 0.000 | 0.000 | 0.112 | 0.112 | 0.112 | 0.032 | 0.000 | 0.032 |
| selectivity[Enspsl].sigma_r | 0.000 | 0.001 | 68.573 | 68.573 | 68.573 | 0.000 | 0.000 | 0.000 |
| selectivity[Wnspsl].mu | 0.000 | 0.000 | -0.240 | -0.240 | -0.240 | -0.021 | 0.000 | -0.021 |
| selectivity[Wnspsl].sigma_l | 0.000 | 0.000 | -2.203 | -2.203 | -2.203 | -0.011 | 0.000 | -0.011 |
| selectivity[Wnspsl].sigma_r | 0.000 | 0.000 | 73.242 | 73.242 | 73.242 | 0.000 | 0.022 | 0.000 |
| selectivity[Espsl].mu | 0.000 | 0.000 | 3.357 | 3.357 | 3.357 | 0.018 | 0.000 | 0.018 |
| selectivity[Espsl].sigma_l | 0.000 | 0.000 | -7.454 | -7.454 | -7.454 | 0.074 | 0.000 | 0.074 |
| selectivity[Espsl].sigma_r | 0.000 | 0.000 | 1.108 | 1.108 | 1.108 | -0.071 | 0.000 | -0.071 |
| selectivity[CRsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| selectivity[CRsl].sigma_l | 0.000 | 0.006 | 1.070 | 45.142 | 45.142 | 0.001 | 0.000 | 0.001 |
| selectivity[CRsl].sigma_r | 0.000 | 0.000 | 7.851 | 7.851 | 7.851 | 0.050 | 0.000 | 0.050 |
| selectivity[SAsl].mu | 0.000 | 0.000 | 4.144 | 4.144 | 4.144 | 0.025 | 0.000 | 0.025 |
| selectivity[SAsl].sigma_l | 0.000 | 0.000 | -0.700 | -0.700 | -0.700 | 0.022 | -0.000 | 0.022 |
| selectivity[SAsl].sigma_r | 0.000 | 0.000 | -31.519 | -31.519 | -31.519 | 0.000 | 0.000 | 0.000 |
| Component | Base_Model | Sensitivity_1 |
| CRsumbio | -31.032 | -31.032 |
| CSacous | -9.835 | -9.836 |
| SAautbio | -3.984 | -3.984 |
| SAsumbio | -6.146 | -6.146 |
| WCacous | -5.916 | -5.916 |
| CRsumage | 323.850 | 323.850 |
| SAautage | 35.117 | 35.118 |
| SAsumage | 221.149 | 221.150 |
| EnspOLF | 24.276 | 24.276 |
| Enspage | 256.069 | 256.068 |
| Espage | 581.502 | 581.502 |
| WnspOLF | 70.250 | 70.250 |
| Wnspage | 157.004 | 157.004 |
| Wspage | 364.751 | 364.751 |
| pspawn | -13.129 | -13.129 |
| pspawn_1993 | -6.015 | -6.015 |
| prior_on_q[CSacous].q | -0.839 | -0.839 |
| prior_on_q[WCacous].q | -1.202 | -1.202 |
| prior_on_q[CRsum].q | -2.207 | -2.207 |
| prior_on_q[SAsum].q | -1.557 | -1.557 |
| prior_on_q[SAaut].q | -1.762 | -1.762 |
| prior_on_relative_abundance[CRsumbio].cv_process_error | 0.000 | 0.000 |
| prior_on_relative_abundance[SAsumbio].cv_process_error | 0.000 | 0.000 |
| prior_on_log_B0_total | 0.000 | 0.000 |
| prior_on_B0_prop_stock1 | 12.555 | 12.555 |
| prior_on_natural_mortality.all | -1.217 | -1.217 |
| prior_on_selectivity[Wspsl].shift_a | 0.378 | 0.378 |
| prior_on_recruitment[E].YCS | -13.750 | -13.750 |
| prior_on_recruitment[W].YCS | -1.785 | -1.785 |
| prior_on_migration[Whome].rates_all | 0.000 | 0.000 |
| prior_on_migration[Espmg].rates_all | 0.000 | 0.000 |
| prior_on_migration[Wspmg].rates_all | 0.000 | 0.000 |
| prior_on_selectivity[Enspsl].all | 0.000 | 0.000 |
| prior_on_selectivity[Wnspsl].all | 0.000 | 0.000 |
| prior_on_selectivity[Espsl].all | 0.000 | 0.000 |
| prior_on_selectivity[CRsl].all | 0.000 | 0.000 |
| prior_on_selectivity[SAsl].all | 0.000 | 0.000 |
| Umax_Ensp1 | 0.000 | 0.000 |
| Umax_Ensp2 | 0.000 | 0.000 |
| Umax_Wnsp1 | 0.000 | 0.000 |
| Umax_Wnsp2 | 0.000 | 0.000 |
| Umax_Esp | 0.000 | 0.000 |
| Umax_Wsp | 0.000 | 0.000 |
| YCS.eq.16 | 0.000 | 0.000 |
| sp.migr | 0.013 | 0.013 |
| Total | 1946.540 | 1946.540 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | cppad_casal_flags_on | cppad_casal_flags_off | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
| observation->CSacous-1991 | 2.342 | 2.342 | 2.404 | 2.404 | 2.404 | 2.344 | 2.342 | 2.344 |
| observation->CSacous-1993 | -0.577 | -0.577 | -0.588 | -0.588 | -0.588 | -0.577 | -0.577 | -0.577 |
| observation->CSacous-1994 | -0.016 | -0.016 | -0.030 | -0.030 | -0.030 | -0.016 | -0.016 | -0.016 |
| observation->CSacous-1995 | -0.562 | -0.562 | -0.567 | -0.567 | -0.567 | -0.562 | -0.562 | -0.562 |
| observation->CSacous-1996 | -0.027 | -0.027 | 0.013 | 0.013 | 0.013 | -0.027 | -0.026 | -0.027 |
| observation->CSacous-1997 | -0.912 | -0.912 | -0.899 | -0.899 | -0.899 | -0.912 | -0.912 | -0.912 |
| observation->CSacous-1998 | -0.054 | -0.054 | -0.004 | -0.004 | -0.004 | -0.055 | -0.054 | -0.055 |
| observation->CSacous-1999 | -1.025 | -1.025 | -1.012 | -1.012 | -1.012 | -1.025 | -1.025 | -1.025 |
| observation->CSacous-2001 | -1.217 | -1.217 | -1.211 | -1.211 | -1.211 | -1.217 | -1.217 | -1.217 |
| observation->CSacous-2002 | -0.297 | -0.297 | -0.338 | -0.338 | -0.338 | -0.297 | -0.297 | -0.297 |
| observation->CSacous-2003 | -0.845 | -0.845 | -0.863 | -0.863 | -0.863 | -0.845 | -0.845 | -0.845 |
| observation->CSacous-2005 | -0.929 | -0.929 | -0.927 | -0.927 | -0.927 | -0.929 | -0.929 | -0.929 |
| observation->CSacous-2006 | -0.939 | -0.939 | -0.950 | -0.950 | -0.950 | -0.939 | -0.939 | -0.939 |
| observation->CSacous-2007 | -0.623 | -0.623 | -0.600 | -0.600 | -0.600 | -0.623 | -0.623 | -0.623 |
| observation->CSacous-2008 | -1.094 | -1.094 | -1.125 | -1.125 | -1.125 | -1.094 | -1.094 | -1.094 |
| observation->CSacous-2009 | -0.185 | -0.185 | -0.110 | -0.110 | -0.110 | -0.186 | -0.185 | -0.186 |
| observation->CSacous-2011 | -1.021 | -1.021 | -1.000 | -1.000 | -1.000 | -1.021 | -1.021 | -1.021 |
| observation->CSacous-2013 | -0.892 | -0.892 | -0.855 | -0.855 | -0.855 | -0.892 | -0.892 | -0.892 |
| observation->CSacous-2015 | -0.190 | -0.190 | -0.150 | -0.150 | -0.150 | -0.191 | -0.190 | -0.191 |
| observation->CSacous-2017 | -1.020 | -1.020 | -1.021 | -1.021 | -1.021 | -1.020 | -1.020 | -1.020 |
| observation->WCacous-1988 | -0.588 | -0.588 | -0.588 | -0.588 | -0.588 | -0.588 | -0.588 | -0.588 |
| observation->WCacous-1989 | -0.183 | -0.183 | -0.168 | -0.168 | -0.168 | -0.184 | -0.183 | -0.184 |
| observation->WCacous-1990 | -0.332 | -0.332 | -0.327 | -0.327 | -0.327 | -0.331 | -0.332 | -0.331 |
| observation->WCacous-1991 | -0.425 | -0.425 | -0.425 | -0.425 | -0.425 | -0.425 | -0.425 | -0.425 |
| observation->WCacous-1992 | -0.744 | -0.744 | -0.744 | -0.744 | -0.744 | -0.744 | -0.744 | -0.744 |
| observation->WCacous-1993 | -0.369 | -0.369 | -0.374 | -0.374 | -0.374 | -0.371 | -0.369 | -0.371 |
| observation->WCacous-1997 | -0.054 | -0.054 | -0.043 | -0.043 | -0.043 | -0.055 | -0.054 | -0.055 |
| observation->WCacous-2000 | -1.265 | -1.265 | -1.272 | -1.272 | -1.272 | -1.264 | -1.265 | -1.264 |
| observation->WCacous-2012 | -0.906 | -0.906 | -0.896 | -0.896 | -0.896 | -0.906 | -0.906 | -0.906 |
| observation->WCacous-2013 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 |
| observation->CRsumbio-1992 | -1.634 | -1.634 | -1.647 | -1.647 | -1.647 | -1.634 | -1.634 | -1.634 |
| observation->CRsumbio-1993 | 0.040 | 0.040 | 0.043 | 0.043 | 0.043 | 0.041 | 0.040 | 0.041 |
| observation->CRsumbio-1994 | -1.760 | -1.760 | -1.760 | -1.760 | -1.760 | -1.761 | -1.760 | -1.761 |
| observation->CRsumbio-1995 | -1.425 | -1.425 | -1.406 | -1.406 | -1.406 | -1.431 | -1.425 | -1.431 |
| observation->CRsumbio-1996 | -1.690 | -1.690 | -1.699 | -1.699 | -1.699 | -1.691 | -1.690 | -1.691 |
| observation->CRsumbio-1997 | -0.607 | -0.607 | -0.635 | -0.635 | -0.635 | -0.609 | -0.607 | -0.609 |
| observation->CRsumbio-1998 | -1.203 | -1.203 | -1.210 | -1.210 | -1.210 | -1.205 | -1.203 | -1.205 |
| observation->CRsumbio-1999 | -0.953 | -0.953 | -0.919 | -0.919 | -0.919 | -0.950 | -0.953 | -0.950 |
| observation->CRsumbio-2000 | -1.629 | -1.629 | -1.632 | -1.632 | -1.632 | -1.629 | -1.629 | -1.629 |
| observation->CRsumbio-2001 | -1.773 | -1.773 | -1.775 | -1.775 | -1.775 | -1.773 | -1.773 | -1.773 |
| observation->CRsumbio-2002 | -1.209 | -1.209 | -1.206 | -1.206 | -1.206 | -1.205 | -1.209 | -1.205 |
| observation->CRsumbio-2003 | -1.749 | -1.749 | -1.744 | -1.744 | -1.744 | -1.748 | -1.749 | -1.748 |
| observation->CRsumbio-2004 | -0.818 | -0.818 | -0.803 | -0.803 | -0.803 | -0.821 | -0.818 | -0.821 |
| observation->CRsumbio-2005 | -1.471 | -1.471 | -1.477 | -1.477 | -1.477 | -1.470 | -1.471 | -1.470 |
| observation->CRsumbio-2006 | -1.314 | -1.314 | -1.306 | -1.306 | -1.306 | -1.314 | -1.314 | -1.314 |
| observation->CRsumbio-2007 | -0.727 | -0.727 | -0.756 | -0.756 | -0.756 | -0.726 | -0.727 | -0.726 |
| observation->CRsumbio-2008 | -0.373 | -0.373 | -0.402 | -0.402 | -0.402 | -0.376 | -0.373 | -0.376 |
| observation->CRsumbio-2009 | -0.586 | -0.586 | -0.559 | -0.559 | -0.559 | -0.587 | -0.586 | -0.587 |
| observation->CRsumbio-2010 | -1.349 | -1.349 | -1.359 | -1.359 | -1.359 | -1.350 | -1.349 | -1.350 |
| observation->CRsumbio-2011 | -1.096 | -1.096 | -1.105 | -1.105 | -1.105 | -1.094 | -1.096 | -1.094 |
| observation->CRsumbio-2012 | -1.439 | -1.439 | -1.448 | -1.448 | -1.448 | -1.438 | -1.439 | -1.438 |
| observation->CRsumbio-2013 | -1.494 | -1.494 | -1.491 | -1.491 | -1.491 | -1.494 | -1.494 | -1.494 |
| observation->CRsumbio-2014 | -1.768 | -1.768 | -1.770 | -1.770 | -1.770 | -1.768 | -1.768 | -1.768 |
| observation->CRsumbio-2016 | -1.410 | -1.410 | -1.411 | -1.411 | -1.411 | -1.411 | -1.410 | -1.411 |
| observation->CRsumbio-2018 | -1.552 | -1.552 | -1.554 | -1.554 | -1.554 | -1.552 | -1.552 | -1.552 |
| observation->SAsumbio-1992 | -0.597 | -0.597 | -0.588 | -0.588 | -0.588 | -0.596 | -0.597 | -0.596 |
| observation->SAsumbio-1993 | -0.314 | -0.314 | -0.309 | -0.309 | -0.309 | -0.314 | -0.314 | -0.314 |
| observation->SAsumbio-1994 | 0.196 | 0.196 | 0.186 | 0.186 | 0.186 | 0.194 | 0.196 | 0.194 |
| observation->SAsumbio-2001 | -0.835 | -0.835 | -0.822 | -0.822 | -0.822 | -0.834 | -0.835 | -0.834 |
| observation->SAsumbio-2002 | -0.794 | -0.794 | -0.777 | -0.777 | -0.777 | -0.794 | -0.794 | -0.794 |
| observation->SAsumbio-2003 | -0.837 | -0.837 | -0.825 | -0.825 | -0.825 | -0.836 | -0.837 | -0.836 |
| observation->SAsumbio-2004 | 0.732 | 0.732 | 0.734 | 0.734 | 0.734 | 0.735 | 0.732 | 0.735 |
| observation->SAsumbio-2005 | -0.258 | -0.258 | -0.218 | -0.218 | -0.218 | -0.255 | -0.258 | -0.255 |
| observation->SAsumbio-2006 | -0.600 | -0.600 | -0.558 | -0.558 | -0.558 | -0.598 | -0.600 | -0.598 |
| observation->SAsumbio-2007 | 0.636 | 0.636 | 0.654 | 0.654 | 0.654 | 0.637 | 0.636 | 0.637 |
| observation->SAsumbio-2008 | -0.461 | -0.461 | -0.462 | -0.462 | -0.462 | -0.463 | -0.461 | -0.463 |
| observation->SAsumbio-2009 | -0.585 | -0.585 | -0.583 | -0.583 | -0.583 | -0.584 | -0.585 | -0.584 |
| observation->SAsumbio-2010 | -0.143 | -0.143 | -0.147 | -0.147 | -0.147 | -0.146 | -0.143 | -0.146 |
| observation->SAsumbio-2012 | -0.848 | -0.848 | -0.835 | -0.835 | -0.835 | -0.848 | -0.848 | -0.848 |
| observation->SAsumbio-2013 | -0.797 | -0.797 | -0.786 | -0.786 | -0.786 | -0.796 | -0.797 | -0.796 |
| observation->SAsumbio-2015 | -0.200 | -0.200 | -0.189 | -0.189 | -0.189 | -0.201 | -0.200 | -0.201 |
| observation->SAsumbio-2017 | -0.638 | -0.638 | -0.620 | -0.620 | -0.620 | -0.638 | -0.638 | -0.638 |
| observation->SAautbio-1992 | -1.459 | -1.459 | -1.450 | -1.450 | -1.450 | -1.460 | -1.459 | -1.460 |
| observation->SAautbio-1996 | -1.233 | -1.233 | -1.250 | -1.250 | -1.250 | -1.232 | -1.233 | -1.232 |
| observation->SAautbio-1998 | -1.308 | -1.308 | -1.284 | -1.284 | -1.284 | -1.306 | -1.308 | -1.306 |
| observation->Espage-1988 | 19.793 | 19.793 | 19.640 | 19.640 | 19.640 | 19.790 | 19.793 | 19.790 |
| observation->Espage-1989 | 15.858 | 15.858 | 15.862 | 15.862 | 15.862 | 15.857 | 15.858 | 15.857 |
| observation->Espage-1990 | 21.488 | 21.488 | 21.446 | 21.446 | 21.446 | 21.486 | 21.488 | 21.486 |
| observation->Espage-1991 | 20.641 | 20.641 | 20.612 | 20.612 | 20.612 | 20.640 | 20.641 | 20.640 |
| observation->Espage-1992 | 24.089 | 24.089 | 24.020 | 24.020 | 24.020 | 24.092 | 24.089 | 24.092 |
| observation->Espage-1993 | 19.305 | 19.305 | 19.328 | 19.328 | 19.328 | 19.304 | 19.305 | 19.304 |
| observation->Espage-1994 | 20.528 | 20.528 | 20.503 | 20.503 | 20.503 | 20.522 | 20.528 | 20.522 |
| observation->Espage-1995 | 22.541 | 22.541 | 22.559 | 22.559 | 22.559 | 22.530 | 22.541 | 22.530 |
| observation->Espage-1996 | 18.590 | 18.590 | 18.577 | 18.577 | 18.577 | 18.590 | 18.590 | 18.590 |
| observation->Espage-1997 | 20.974 | 20.974 | 20.964 | 20.964 | 20.964 | 20.978 | 20.974 | 20.978 |
| observation->Espage-1998 | 20.587 | 20.587 | 20.611 | 20.611 | 20.611 | 20.579 | 20.587 | 20.579 |
| observation->Espage-1999 | 22.886 | 22.886 | 22.862 | 22.862 | 22.862 | 22.875 | 22.886 | 22.875 |
| observation->Espage-2000 | 23.321 | 23.321 | 23.314 | 23.314 | 23.314 | 23.321 | 23.321 | 23.321 |
| observation->Espage-2001 | 20.735 | 20.735 | 20.773 | 20.773 | 20.773 | 20.735 | 20.735 | 20.735 |
| observation->Espage-2002 | 26.248 | 26.248 | 26.287 | 26.287 | 26.287 | 26.243 | 26.248 | 26.243 |
| observation->Espage-2003 | 19.120 | 19.120 | 19.120 | 19.120 | 19.120 | 19.118 | 19.120 | 19.118 |
| observation->Espage-2004 | 22.692 | 22.692 | 22.642 | 22.642 | 22.642 | 22.698 | 22.692 | 22.698 |
| observation->Espage-2005 | 26.122 | 26.122 | 26.070 | 26.070 | 26.070 | 26.120 | 26.122 | 26.120 |
| observation->Espage-2006 | 23.242 | 23.242 | 23.149 | 23.149 | 23.149 | 23.245 | 23.242 | 23.245 |
| observation->Espage-2007 | 25.274 | 25.274 | 25.210 | 25.210 | 25.210 | 25.277 | 25.274 | 25.277 |
| observation->Espage-2008 | 22.167 | 22.167 | 22.129 | 22.129 | 22.129 | 22.166 | 22.167 | 22.166 |
| observation->Espage-2009 | 18.691 | 18.691 | 18.690 | 18.690 | 18.690 | 18.691 | 18.691 | 18.691 |
| observation->Espage-2010 | 21.855 | 21.855 | 21.851 | 21.851 | 21.851 | 21.856 | 21.855 | 21.856 |
| observation->Espage-2014 | 20.616 | 20.616 | 20.648 | 20.648 | 20.648 | 20.614 | 20.616 | 20.614 |
| observation->Espage-2015 | 21.823 | 21.823 | 21.870 | 21.870 | 21.870 | 21.820 | 21.823 | 21.820 |
| observation->Espage-2016 | 21.204 | 21.204 | 21.204 | 21.204 | 21.204 | 21.203 | 21.204 | 21.203 |
| observation->Espage-2017 | 21.575 | 21.575 | 21.563 | 21.563 | 21.563 | 21.578 | 21.575 | 21.578 |
| observation->Wspage-1988 | 15.724 | 15.724 | 15.753 | 15.753 | 15.753 | 15.729 | 15.724 | 15.729 |
| observation->Wspage-1989 | 11.555 | 11.555 | 11.566 | 11.566 | 11.566 | 11.558 | 11.555 | 11.558 |
| observation->Wspage-1990 | 11.752 | 11.752 | 11.790 | 11.790 | 11.790 | 11.750 | 11.752 | 11.750 |
| observation->Wspage-1991 | 13.036 | 13.036 | 13.051 | 13.051 | 13.051 | 13.037 | 13.036 | 13.037 |
| observation->Wspage-1992 | 10.178 | 10.178 | 10.170 | 10.170 | 10.170 | 10.179 | 10.178 | 10.179 |
| observation->Wspage-1993 | 10.569 | 10.569 | 10.579 | 10.579 | 10.579 | 10.571 | 10.569 | 10.571 |
| observation->Wspage-1994 | 9.918 | 9.918 | 9.924 | 9.924 | 9.924 | 9.918 | 9.918 | 9.918 |
| observation->Wspage-1995 | 13.403 | 13.403 | 13.396 | 13.396 | 13.396 | 13.399 | 13.403 | 13.399 |
| observation->Wspage-1996 | 11.840 | 11.840 | 11.844 | 11.844 | 11.844 | 11.841 | 11.840 | 11.841 |
| observation->Wspage-1997 | 11.230 | 11.230 | 11.243 | 11.243 | 11.243 | 11.233 | 11.230 | 11.233 |
| observation->Wspage-1998 | 11.761 | 11.761 | 11.762 | 11.762 | 11.762 | 11.761 | 11.761 | 11.761 |
| observation->Wspage-1999 | 11.975 | 11.975 | 11.981 | 11.981 | 11.981 | 11.976 | 11.975 | 11.976 |
| observation->Wspage-2000 | 11.256 | 11.256 | 11.260 | 11.260 | 11.260 | 11.256 | 11.256 | 11.256 |
| observation->Wspage-2001 | 12.179 | 12.179 | 12.201 | 12.201 | 12.201 | 12.181 | 12.179 | 12.181 |
| observation->Wspage-2002 | 9.731 | 9.731 | 9.745 | 9.745 | 9.745 | 9.732 | 9.731 | 9.732 |
| observation->Wspage-2003 | 9.555 | 9.555 | 9.556 | 9.556 | 9.556 | 9.555 | 9.555 | 9.555 |
| observation->Wspage-2004 | 14.340 | 14.340 | 14.304 | 14.304 | 14.304 | 14.342 | 14.340 | 14.342 |
| observation->Wspage-2005 | 14.932 | 14.932 | 14.977 | 14.977 | 14.977 | 14.934 | 14.932 | 14.934 |
| observation->Wspage-2006 | 13.817 | 13.817 | 13.872 | 13.872 | 13.872 | 13.817 | 13.817 | 13.817 |
| observation->Wspage-2007 | 11.498 | 11.498 | 11.516 | 11.516 | 11.516 | 11.500 | 11.498 | 11.500 |
| observation->Wspage-2008 | 12.195 | 12.195 | 12.194 | 12.194 | 12.194 | 12.196 | 12.195 | 12.196 |
| observation->Wspage-2009 | 12.631 | 12.631 | 12.594 | 12.594 | 12.594 | 12.635 | 12.631 | 12.635 |
| observation->Wspage-2010 | 11.316 | 11.316 | 11.299 | 11.299 | 11.299 | 11.317 | 11.316 | 11.317 |
| observation->Wspage-2011 | 11.154 | 11.154 | 11.137 | 11.137 | 11.137 | 11.155 | 11.154 | 11.155 |
| observation->Wspage-2012 | 11.867 | 11.867 | 11.860 | 11.860 | 11.860 | 11.866 | 11.867 | 11.866 |
| observation->Wspage-2013 | 11.041 | 11.041 | 11.065 | 11.065 | 11.065 | 11.043 | 11.041 | 11.043 |
| observation->Wspage-2014 | 12.944 | 12.944 | 12.941 | 12.941 | 12.941 | 12.944 | 12.944 | 12.944 |
| observation->Wspage-2015 | 13.134 | 13.134 | 13.101 | 13.101 | 13.101 | 13.136 | 13.134 | 13.136 |
| observation->Wspage-2016 | 14.272 | 14.272 | 14.273 | 14.273 | 14.273 | 14.268 | 14.272 | 14.268 |
| observation->Wspage-2017 | 13.745 | 13.745 | 13.797 | 13.797 | 13.797 | 13.746 | 13.745 | 13.746 |
| observation->EnspOLF-1992 | 4.397 | 4.397 | 4.388 | 4.388 | 4.388 | 4.396 | 4.397 | 4.396 |
| observation->EnspOLF-1994 | 6.647 | 6.647 | 6.678 | 6.678 | 6.678 | 6.645 | 6.647 | 6.645 |
| observation->EnspOLF-1996 | 7.897 | 7.897 | 7.906 | 7.906 | 7.906 | 7.899 | 7.897 | 7.899 |
| observation->EnspOLF-1998 | 5.301 | 5.301 | 5.303 | 5.303 | 5.303 | 5.301 | 5.301 | 5.301 |
| observation->Enspage-1999 | 14.332 | 14.332 | 14.287 | 14.287 | 14.287 | 14.331 | 14.332 | 14.331 |
| observation->Enspage-2000 | 13.975 | 13.975 | 13.960 | 13.960 | 13.960 | 13.973 | 13.975 | 13.973 |
| observation->Enspage-2001 | 13.979 | 13.979 | 13.929 | 13.929 | 13.929 | 13.959 | 13.979 | 13.959 |
| observation->Enspage-2002 | 12.081 | 12.081 | 12.078 | 12.078 | 12.078 | 12.087 | 12.081 | 12.087 |
| observation->Enspage-2003 | 9.700 | 9.700 | 9.706 | 9.706 | 9.706 | 9.702 | 9.700 | 9.702 |
| observation->Enspage-2004 | 12.966 | 12.966 | 12.986 | 12.986 | 12.986 | 12.972 | 12.966 | 12.972 |
| observation->Enspage-2005 | 11.012 | 11.012 | 11.009 | 11.009 | 11.009 | 11.009 | 11.012 | 11.009 |
| observation->Enspage-2006 | 12.741 | 12.741 | 12.712 | 12.712 | 12.712 | 12.744 | 12.741 | 12.744 |
| observation->Enspage-2007 | 11.061 | 11.061 | 11.052 | 11.052 | 11.052 | 11.060 | 11.061 | 11.060 |
| observation->Enspage-2008 | 12.104 | 12.104 | 12.101 | 12.101 | 12.101 | 12.100 | 12.104 | 12.100 |
| observation->Enspage-2009 | 10.056 | 10.056 | 10.055 | 10.055 | 10.055 | 10.055 | 10.056 | 10.055 |
| observation->Enspage-2010 | 17.581 | 17.581 | 17.627 | 17.627 | 17.627 | 17.576 | 17.581 | 17.576 |
| observation->Enspage-2011 | 13.399 | 13.399 | 13.412 | 13.412 | 13.412 | 13.402 | 13.399 | 13.402 |
| observation->Enspage-2012 | 13.149 | 13.149 | 13.134 | 13.134 | 13.134 | 13.148 | 13.149 | 13.148 |
| observation->Enspage-2013 | 16.694 | 16.694 | 16.659 | 16.659 | 16.659 | 16.691 | 16.694 | 16.691 |
| observation->Enspage-2014 | 13.869 | 13.869 | 13.870 | 13.870 | 13.870 | 13.868 | 13.869 | 13.868 |
| observation->Enspage-2015 | 12.760 | 12.760 | 12.776 | 12.776 | 12.776 | 12.764 | 12.760 | 12.764 |
| observation->Enspage-2016 | 19.224 | 19.224 | 19.203 | 19.203 | 19.203 | 19.222 | 19.224 | 19.222 |
| observation->Enspage-2017 | 15.562 | 15.562 | 15.511 | 15.511 | 15.511 | 15.552 | 15.562 | 15.552 |
| observation->WnspOLF-1992 | 10.122 | 10.122 | 10.129 | 10.129 | 10.129 | 10.124 | 10.122 | 10.124 |
| observation->WnspOLF-1993 | 9.045 | 9.045 | 8.991 | 8.991 | 8.991 | 9.047 | 9.045 | 9.047 |
| observation->WnspOLF-1994 | 15.930 | 15.930 | 15.893 | 15.893 | 15.893 | 15.931 | 15.930 | 15.931 |
| observation->WnspOLF-1996 | 9.788 | 9.788 | 9.752 | 9.752 | 9.752 | 9.784 | 9.788 | 9.784 |
| observation->WnspOLF-1999 | 11.554 | 11.553 | 11.593 | 11.593 | 11.593 | 11.553 | 11.553 | 11.553 |
| observation->WnspOLF-2000 | 13.812 | 13.812 | 13.892 | 13.892 | 13.892 | 13.817 | 13.812 | 13.817 |
| observation->Wnspage-2001 | 8.032 | 8.032 | 7.994 | 7.994 | 7.994 | 8.036 | 8.032 | 8.036 |
| observation->Wnspage-2002 | 8.715 | 8.715 | 8.701 | 8.701 | 8.701 | 8.714 | 8.715 | 8.714 |
| observation->Wnspage-2003 | 10.473 | 10.473 | 10.507 | 10.507 | 10.507 | 10.473 | 10.473 | 10.473 |
| observation->Wnspage-2004 | 7.155 | 7.155 | 7.140 | 7.140 | 7.140 | 7.154 | 7.155 | 7.154 |
| observation->Wnspage-2006 | 9.589 | 9.589 | 9.551 | 9.551 | 9.551 | 9.590 | 9.589 | 9.590 |
| observation->Wnspage-2007 | 10.861 | 10.861 | 10.822 | 10.822 | 10.822 | 10.860 | 10.861 | 10.860 |
| observation->Wnspage-2008 | 12.425 | 12.425 | 12.435 | 12.435 | 12.435 | 12.422 | 12.425 | 12.422 |
| observation->Wnspage-2009 | 14.716 | 14.716 | 14.790 | 14.790 | 14.790 | 14.719 | 14.716 | 14.719 |
| observation->Wnspage-2010 | 11.405 | 11.405 | 11.370 | 11.370 | 11.370 | 11.405 | 11.405 | 11.405 |
| observation->Wnspage-2011 | 11.267 | 11.267 | 11.275 | 11.275 | 11.275 | 11.265 | 11.267 | 11.265 |
| observation->Wnspage-2012 | 10.454 | 10.454 | 10.465 | 10.465 | 10.465 | 10.453 | 10.454 | 10.453 |
| observation->Wnspage-2013 | 13.633 | 13.633 | 13.634 | 13.634 | 13.634 | 13.634 | 13.633 | 13.634 |
| observation->Wnspage-2014 | 12.608 | 12.608 | 12.597 | 12.597 | 12.597 | 12.609 | 12.608 | 12.609 |
| observation->Wnspage-2016 | 15.687 | 15.687 | 15.722 | 15.722 | 15.722 | 15.683 | 15.687 | 15.683 |
| observation->CRsumage-1992 | 15.584 | 15.584 | 15.566 | 15.566 | 15.566 | 15.570 | 15.584 | 15.570 |
| observation->CRsumage-1993 | 10.616 | 10.616 | 10.624 | 10.624 | 10.624 | 10.613 | 10.616 | 10.613 |
| observation->CRsumage-1994 | 18.170 | 18.170 | 18.130 | 18.130 | 18.130 | 18.174 | 18.170 | 18.174 |
| observation->CRsumage-1995 | 14.285 | 14.285 | 14.242 | 14.242 | 14.242 | 14.287 | 14.285 | 14.287 |
| observation->CRsumage-1996 | 11.567 | 11.567 | 11.607 | 11.607 | 11.607 | 11.566 | 11.567 | 11.566 |
| observation->CRsumage-1997 | 15.754 | 15.754 | 15.688 | 15.688 | 15.688 | 15.750 | 15.754 | 15.750 |
| observation->CRsumage-1998 | 14.690 | 14.690 | 14.690 | 14.690 | 14.690 | 14.686 | 14.690 | 14.686 |
| observation->CRsumage-1999 | 12.061 | 12.061 | 12.084 | 12.084 | 12.084 | 12.061 | 12.061 | 12.061 |
| observation->CRsumage-2000 | 14.323 | 14.323 | 14.283 | 14.283 | 14.283 | 14.326 | 14.323 | 14.326 |
| observation->CRsumage-2001 | 19.659 | 19.659 | 19.520 | 19.520 | 19.520 | 19.651 | 19.659 | 19.651 |
| observation->CRsumage-2002 | 10.969 | 10.969 | 10.960 | 10.960 | 10.960 | 10.971 | 10.969 | 10.971 |
| observation->CRsumage-2003 | 11.251 | 11.251 | 11.210 | 11.210 | 11.210 | 11.254 | 11.251 | 11.254 |
| observation->CRsumage-2004 | 9.553 | 9.553 | 9.561 | 9.561 | 9.561 | 9.556 | 9.553 | 9.556 |
| observation->CRsumage-2005 | 12.753 | 12.753 | 12.654 | 12.654 | 12.654 | 12.749 | 12.753 | 12.749 |
| observation->CRsumage-2006 | 10.316 | 10.316 | 10.317 | 10.317 | 10.317 | 10.317 | 10.316 | 10.317 |
| observation->CRsumage-2007 | 13.562 | 13.562 | 13.504 | 13.504 | 13.504 | 13.561 | 13.562 | 13.561 |
| observation->CRsumage-2008 | 11.661 | 11.661 | 11.639 | 11.639 | 11.639 | 11.665 | 11.661 | 11.665 |
| observation->CRsumage-2009 | 12.006 | 12.006 | 11.965 | 11.965 | 11.965 | 12.002 | 12.006 | 12.002 |
| observation->CRsumage-2010 | 11.048 | 11.048 | 11.055 | 11.055 | 11.055 | 11.052 | 11.048 | 11.052 |
| observation->CRsumage-2011 | 12.579 | 12.579 | 12.571 | 12.571 | 12.571 | 12.577 | 12.579 | 12.577 |
| observation->CRsumage-2012 | 17.228 | 17.228 | 17.141 | 17.141 | 17.141 | 17.230 | 17.228 | 17.230 |
| observation->CRsumage-2013 | 11.843 | 11.843 | 11.822 | 11.822 | 11.822 | 11.845 | 11.843 | 11.845 |
| observation->CRsumage-2014 | 11.286 | 11.286 | 11.271 | 11.271 | 11.271 | 11.288 | 11.286 | 11.288 |
| observation->CRsumage-2016 | 9.866 | 9.866 | 9.847 | 9.847 | 9.847 | 9.867 | 9.866 | 9.867 |
| observation->CRsumage-2018 | 11.931 | 11.931 | 11.895 | 11.895 | 11.895 | 11.935 | 11.931 | 11.935 |
| observation->SAsumage-1992 | 12.246 | 12.246 | 12.269 | 12.269 | 12.269 | 12.241 | 12.246 | 12.241 |
| observation->SAsumage-1993 | 12.470 | 12.470 | 12.502 | 12.502 | 12.502 | 12.483 | 12.470 | 12.483 |
| observation->SAsumage-1994 | 10.811 | 10.811 | 10.818 | 10.818 | 10.818 | 10.808 | 10.811 | 10.808 |
| observation->SAsumage-2001 | 12.749 | 12.749 | 12.839 | 12.839 | 12.839 | 12.762 | 12.749 | 12.762 |
| observation->SAsumage-2002 | 12.209 | 12.209 | 12.254 | 12.254 | 12.254 | 12.216 | 12.209 | 12.216 |
| observation->SAsumage-2003 | 13.386 | 13.386 | 13.386 | 13.386 | 13.386 | 13.388 | 13.386 | 13.388 |
| observation->SAsumage-2004 | 11.067 | 11.067 | 11.005 | 11.005 | 11.005 | 11.064 | 11.067 | 11.064 |
| observation->SAsumage-2005 | 15.278 | 15.278 | 15.386 | 15.386 | 15.386 | 15.280 | 15.278 | 15.280 |
| observation->SAsumage-2006 | 14.112 | 14.112 | 14.078 | 14.078 | 14.078 | 14.110 | 14.112 | 14.110 |
| observation->SAsumage-2007 | 10.649 | 10.649 | 10.639 | 10.639 | 10.639 | 10.649 | 10.649 | 10.649 |
| observation->SAsumage-2008 | 13.771 | 13.771 | 13.836 | 13.836 | 13.836 | 13.766 | 13.771 | 13.766 |
| observation->SAsumage-2009 | 15.513 | 15.513 | 15.530 | 15.530 | 15.530 | 15.520 | 15.513 | 15.520 |
| observation->SAsumage-2010 | 15.081 | 15.081 | 15.130 | 15.130 | 15.130 | 15.082 | 15.081 | 15.082 |
| observation->SAsumage-2012 | 13.437 | 13.437 | 13.479 | 13.479 | 13.479 | 13.439 | 13.437 | 13.439 |
| observation->SAsumage-2013 | 11.954 | 11.954 | 11.982 | 11.982 | 11.982 | 11.956 | 11.954 | 11.956 |
| observation->SAsumage-2015 | 13.522 | 13.522 | 13.540 | 13.540 | 13.540 | 13.524 | 13.522 | 13.524 |
| observation->SAsumage-2017 | 12.492 | 12.492 | 12.478 | 12.478 | 12.478 | 12.487 | 12.492 | 12.487 |
| observation->SAautage-1992 | 11.809 | 11.809 | 11.857 | 11.857 | 11.857 | 11.819 | 11.809 | 11.819 |
| observation->SAautage-1996 | 10.449 | 10.449 | 10.426 | 10.426 | 10.426 | 10.450 | 10.449 | 10.450 |
| observation->SAautage-1998 | 12.809 | 12.809 | 12.835 | 12.835 | 12.835 | 12.810 | 12.809 | 12.810 |
| observation->pspawn_1993 | -6.017 | -6.017 | -6.015 | -6.015 | -6.015 | -6.016 | -6.017 | -6.016 |
| observation->pspawn-1992 | -4.848 | -4.848 | -4.829 | -4.829 | -4.829 | -4.852 | -4.848 | -4.852 |
| observation->pspawn-1998 | -8.284 | -8.284 | -8.300 | -8.300 | -8.300 | -8.291 | -8.284 | -8.291 |
| prior->CSacousq->catchability[CSacous].q | -0.849 | -0.849 | -0.839 | -0.839 | -0.839 | -0.847 | -0.849 | -0.847 |
| prior->WCacousq->catchability[WCacous].q | -1.162 | -1.162 | -1.202 | -1.202 | -1.202 | -1.163 | -1.162 | -1.163 |
| prior->CRsumq->catchability[CRsum].q | -2.155 | -2.155 | -2.207 | -2.207 | -2.207 | -2.153 | -2.155 | -2.153 |
| prior->SAsumq->catchability[SAsum].q | -1.762 | -1.762 | -1.557 | -1.557 | -1.557 | -1.760 | -1.762 | -1.760 |
| prior->SAautq->catchability[SAaut].q | -1.913 | -1.913 | -1.762 | -1.762 | -1.762 | -1.911 | -1.913 | -1.911 |
| prior->CR_process_error->observation[CRsumbio].process_error | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SA_process_error->observation[SAsumbio].process_error | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->B0_E_with_total_log_b0_prior->process[recruit_E].b0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->B0_W_with_proportion_prior->process[recruit_W].b0 | 12.544 | 12.544 | 12.555 | 12.555 | 12.555 | 12.545 | 12.544 | 12.545 |
| prior->M_all->process[Instant_mortality].m{west.sa} | -1.085 | -1.085 | -1.217 | -1.217 | -1.217 | -1.083 | -1.085 | -1.083 |
| prior->Wspsl_shift_param->time_varying[shifted_mu].a | 0.420 | 0.420 | 0.378 | 0.378 | 0.378 | 0.422 | 0.420 | 0.422 |
| prior->YCS_E->process[recruit_E].ycs_values{1975} | -0.624 | -0.624 | -0.623 | -0.623 | -0.623 | -0.624 | -0.624 | -0.624 |
| prior->YCS_E->process[recruit_E].ycs_values{1976} | -0.316 | -0.316 | -0.319 | -0.319 | -0.319 | -0.314 | -0.316 | -0.314 |
| prior->YCS_E->process[recruit_E].ycs_values{1977} | -0.227 | -0.227 | -0.238 | -0.238 | -0.238 | -0.225 | -0.227 | -0.225 |
| prior->YCS_E->process[recruit_E].ycs_values{1978} | 0.654 | 0.654 | 0.615 | 0.615 | 0.615 | 0.656 | 0.654 | 0.656 |
| prior->YCS_E->process[recruit_E].ycs_values{1979} | 0.084 | 0.084 | 0.062 | 0.062 | 0.062 | 0.086 | 0.084 | 0.086 |
| prior->YCS_E->process[recruit_E].ycs_values{1980} | -0.630 | -0.630 | -0.627 | -0.627 | -0.627 | -0.630 | -0.630 | -0.630 |
| prior->YCS_E->process[recruit_E].ycs_values{1981} | -0.619 | -0.619 | -0.623 | -0.623 | -0.623 | -0.619 | -0.619 | -0.619 |
| prior->YCS_E->process[recruit_E].ycs_values{1982} | -0.550 | -0.550 | -0.542 | -0.542 | -0.542 | -0.551 | -0.550 | -0.551 |
| prior->YCS_E->process[recruit_E].ycs_values{1983} | -0.627 | -0.627 | -0.630 | -0.630 | -0.630 | -0.627 | -0.627 | -0.627 |
| prior->YCS_E->process[recruit_E].ycs_values{1984} | -0.591 | -0.591 | -0.596 | -0.596 | -0.596 | -0.591 | -0.591 | -0.591 |
| prior->YCS_E->process[recruit_E].ycs_values{1985} | -0.641 | -0.641 | -0.642 | -0.642 | -0.642 | -0.641 | -0.641 | -0.641 |
| prior->YCS_E->process[recruit_E].ycs_values{1986} | -0.408 | -0.408 | -0.400 | -0.400 | -0.400 | -0.408 | -0.408 | -0.408 |
| prior->YCS_E->process[recruit_E].ycs_values{1987} | 0.142 | 0.142 | 0.135 | 0.135 | 0.135 | 0.142 | 0.142 | 0.142 |
| prior->YCS_E->process[recruit_E].ycs_values{1988} | 0.026 | 0.026 | 0.019 | 0.019 | 0.019 | 0.025 | 0.026 | 0.025 |
| prior->YCS_E->process[recruit_E].ycs_values{1989} | -0.631 | -0.631 | -0.632 | -0.632 | -0.632 | -0.631 | -0.631 | -0.631 |
| prior->YCS_E->process[recruit_E].ycs_values{1990} | 0.159 | 0.159 | 0.158 | 0.158 | 0.158 | 0.159 | 0.159 | 0.159 |
| prior->YCS_E->process[recruit_E].ycs_values{1991} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{1992} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{1993} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{1994} | -0.530 | -0.530 | -0.525 | -0.525 | -0.525 | -0.531 | -0.530 | -0.531 |
| prior->YCS_E->process[recruit_E].ycs_values{1995} | -0.534 | -0.534 | -0.538 | -0.538 | -0.538 | -0.534 | -0.534 | -0.534 |
| prior->YCS_E->process[recruit_E].ycs_values{1996} | -0.574 | -0.574 | -0.577 | -0.577 | -0.577 | -0.573 | -0.574 | -0.573 |
| prior->YCS_E->process[recruit_E].ycs_values{1997} | -0.623 | -0.623 | -0.622 | -0.622 | -0.622 | -0.623 | -0.623 | -0.623 |
| prior->YCS_E->process[recruit_E].ycs_values{1998} | -0.512 | -0.512 | -0.513 | -0.513 | -0.513 | -0.511 | -0.512 | -0.511 |
| prior->YCS_E->process[recruit_E].ycs_values{1999} | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 |
| prior->YCS_E->process[recruit_E].ycs_values{2000} | -0.616 | -0.616 | -0.614 | -0.614 | -0.614 | -0.616 | -0.616 | -0.616 |
| prior->YCS_E->process[recruit_E].ycs_values{2001} | -0.065 | -0.065 | -0.071 | -0.071 | -0.071 | -0.065 | -0.065 | -0.065 |
| prior->YCS_E->process[recruit_E].ycs_values{2002} | -0.543 | -0.543 | -0.545 | -0.545 | -0.545 | -0.542 | -0.543 | -0.542 |
| prior->YCS_E->process[recruit_E].ycs_values{2003} | -0.586 | -0.586 | -0.585 | -0.585 | -0.585 | -0.586 | -0.586 | -0.586 |
| prior->YCS_E->process[recruit_E].ycs_values{2004} | -0.568 | -0.568 | -0.568 | -0.568 | -0.568 | -0.568 | -0.568 | -0.568 |
| prior->YCS_E->process[recruit_E].ycs_values{2005} | -0.579 | -0.579 | -0.578 | -0.578 | -0.578 | -0.579 | -0.579 | -0.579 |
| prior->YCS_E->process[recruit_E].ycs_values{2006} | -0.483 | -0.483 | -0.482 | -0.482 | -0.482 | -0.483 | -0.483 | -0.483 |
| prior->YCS_E->process[recruit_E].ycs_values{2007} | -0.567 | -0.567 | -0.566 | -0.566 | -0.566 | -0.567 | -0.567 | -0.567 |
| prior->YCS_E->process[recruit_E].ycs_values{2008} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_E->process[recruit_E].ycs_values{2009} | -0.561 | -0.561 | -0.562 | -0.562 | -0.562 | -0.561 | -0.561 | -0.561 |
| prior->YCS_E->process[recruit_E].ycs_values{2010} | -0.031 | -0.031 | -0.046 | -0.046 | -0.046 | -0.031 | -0.031 | -0.031 |
| prior->YCS_E->process[recruit_E].ycs_values{2011} | -0.408 | -0.408 | -0.408 | -0.408 | -0.408 | -0.408 | -0.408 | -0.408 |
| prior->YCS_E->process[recruit_E].ycs_values{2012} | -0.019 | -0.019 | -0.023 | -0.023 | -0.023 | -0.019 | -0.019 | -0.019 |
| prior->YCS_E->process[recruit_E].ycs_values{2013} | -0.238 | -0.238 | -0.242 | -0.242 | -0.242 | -0.238 | -0.238 | -0.238 |
| prior->YCS_E->process[recruit_E].ycs_values{2014} | -0.317 | -0.317 | -0.314 | -0.314 | -0.314 | -0.317 | -0.317 | -0.317 |
| prior->YCS_E->process[recruit_E].ycs_values{2015} | -0.279 | -0.279 | -0.302 | -0.302 | -0.302 | -0.284 | -0.279 | -0.284 |
| prior->YCS_E->process[recruit_E].ycs_values{2016} | 0.363 | 0.363 | 0.373 | 0.373 | 0.373 | 0.364 | 0.363 | 0.364 |
| prior->YCS_W->process[recruit_W].ycs_values{1975} | -0.616 | -0.616 | -0.617 | -0.617 | -0.617 | -0.616 | -0.616 | -0.616 |
| prior->YCS_W->process[recruit_W].ycs_values{1976} | -0.195 | -0.195 | -0.184 | -0.184 | -0.184 | -0.195 | -0.195 | -0.195 |
| prior->YCS_W->process[recruit_W].ycs_values{1977} | -0.376 | -0.376 | -0.396 | -0.396 | -0.396 | -0.376 | -0.376 | -0.376 |
| prior->YCS_W->process[recruit_W].ycs_values{1978} | -0.396 | -0.396 | -0.417 | -0.417 | -0.417 | -0.397 | -0.396 | -0.397 |
| prior->YCS_W->process[recruit_W].ycs_values{1979} | -0.607 | -0.607 | -0.612 | -0.612 | -0.612 | -0.607 | -0.607 | -0.607 |
| prior->YCS_W->process[recruit_W].ycs_values{1980} | -0.567 | -0.567 | -0.573 | -0.573 | -0.573 | -0.568 | -0.567 | -0.568 |
| prior->YCS_W->process[recruit_W].ycs_values{1981} | -0.502 | -0.502 | -0.508 | -0.508 | -0.508 | -0.502 | -0.502 | -0.502 |
| prior->YCS_W->process[recruit_W].ycs_values{1982} | -0.606 | -0.606 | -0.607 | -0.607 | -0.607 | -0.606 | -0.606 | -0.606 |
| prior->YCS_W->process[recruit_W].ycs_values{1983} | -0.109 | -0.109 | -0.111 | -0.111 | -0.111 | -0.108 | -0.109 | -0.108 |
| prior->YCS_W->process[recruit_W].ycs_values{1984} | -0.163 | -0.163 | -0.163 | -0.163 | -0.163 | -0.161 | -0.163 | -0.161 |
| prior->YCS_W->process[recruit_W].ycs_values{1985} | -0.619 | -0.619 | -0.620 | -0.620 | -0.620 | -0.619 | -0.619 | -0.619 |
| prior->YCS_W->process[recruit_W].ycs_values{1986} | -0.098 | -0.098 | -0.098 | -0.098 | -0.098 | -0.097 | -0.098 | -0.097 |
| prior->YCS_W->process[recruit_W].ycs_values{1987} | 0.788 | 0.788 | 0.782 | 0.782 | 0.782 | 0.789 | 0.788 | 0.789 |
| prior->YCS_W->process[recruit_W].ycs_values{1988} | -0.252 | -0.252 | -0.255 | -0.255 | -0.255 | -0.251 | -0.252 | -0.251 |
| prior->YCS_W->process[recruit_W].ycs_values{1989} | 1.207 | 1.207 | 1.211 | 1.211 | 1.211 | 1.207 | 1.207 | 1.207 |
| prior->YCS_W->process[recruit_W].ycs_values{1990} | 1.197 | 1.197 | 1.204 | 1.204 | 1.204 | 1.198 | 1.197 | 1.198 |
| prior->YCS_W->process[recruit_W].ycs_values{1991} | -0.081 | -0.081 | -0.080 | -0.080 | -0.080 | -0.081 | -0.081 | -0.081 |
| prior->YCS_W->process[recruit_W].ycs_values{1992} | 0.480 | 0.480 | 0.480 | 0.480 | 0.480 | 0.480 | 0.480 | 0.480 |
| prior->YCS_W->process[recruit_W].ycs_values{1993} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_W->process[recruit_W].ycs_values{1994} | 0.014 | 0.014 | 0.020 | 0.020 | 0.020 | 0.014 | 0.014 | 0.014 |
| prior->YCS_W->process[recruit_W].ycs_values{1995} | -0.410 | -0.410 | -0.413 | -0.413 | -0.413 | -0.409 | -0.410 | -0.409 |
| prior->YCS_W->process[recruit_W].ycs_values{1996} | -0.301 | -0.301 | -0.306 | -0.306 | -0.306 | -0.301 | -0.301 | -0.301 |
| prior->YCS_W->process[recruit_W].ycs_values{1997} | -0.466 | -0.466 | -0.471 | -0.471 | -0.471 | -0.467 | -0.466 | -0.467 |
| prior->YCS_W->process[recruit_W].ycs_values{1998} | -0.322 | -0.322 | -0.334 | -0.334 | -0.334 | -0.323 | -0.322 | -0.323 |
| prior->YCS_W->process[recruit_W].ycs_values{1999} | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 | 2.014 |
| prior->YCS_W->process[recruit_W].ycs_values{2000} | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 | -0.643 |
| prior->YCS_W->process[recruit_W].ycs_values{2001} | 0.856 | 0.856 | 0.846 | 0.846 | 0.846 | 0.855 | 0.856 | 0.855 |
| prior->YCS_W->process[recruit_W].ycs_values{2002} | -0.222 | -0.222 | -0.222 | -0.222 | -0.222 | -0.222 | -0.222 | -0.222 |
| prior->YCS_W->process[recruit_W].ycs_values{2003} | -0.612 | -0.612 | -0.612 | -0.612 | -0.612 | -0.612 | -0.612 | -0.612 |
| prior->YCS_W->process[recruit_W].ycs_values{2004} | -0.570 | -0.570 | -0.571 | -0.571 | -0.571 | -0.570 | -0.570 | -0.570 |
| prior->YCS_W->process[recruit_W].ycs_values{2005} | -0.574 | -0.574 | -0.576 | -0.576 | -0.576 | -0.574 | -0.574 | -0.574 |
| prior->YCS_W->process[recruit_W].ycs_values{2006} | -0.280 | -0.280 | -0.279 | -0.279 | -0.279 | -0.280 | -0.280 | -0.280 |
| prior->YCS_W->process[recruit_W].ycs_values{2007} | -0.438 | -0.438 | -0.436 | -0.436 | -0.436 | -0.438 | -0.438 | -0.438 |
| prior->YCS_W->process[recruit_W].ycs_values{2008} | -0.464 | -0.464 | -0.463 | -0.463 | -0.463 | -0.464 | -0.464 | -0.464 |
| prior->YCS_W->process[recruit_W].ycs_values{2009} | -0.514 | -0.514 | -0.508 | -0.508 | -0.508 | -0.514 | -0.514 | -0.514 |
| prior->YCS_W->process[recruit_W].ycs_values{2010} | 0.071 | 0.071 | 0.078 | 0.078 | 0.078 | 0.070 | 0.071 | 0.070 |
| prior->YCS_W->process[recruit_W].ycs_values{2011} | 0.031 | 0.031 | 0.043 | 0.043 | 0.043 | 0.030 | 0.031 | 0.030 |
| prior->YCS_W->process[recruit_W].ycs_values{2012} | -0.050 | -0.050 | -0.059 | -0.059 | -0.059 | -0.049 | -0.050 | -0.049 |
| prior->YCS_W->process[recruit_W].ycs_values{2013} | -0.489 | -0.489 | -0.490 | -0.490 | -0.490 | -0.488 | -0.489 | -0.488 |
| prior->YCS_W->process[recruit_W].ycs_values{2014} | 1.730 | 1.730 | 1.742 | 1.742 | 1.742 | 1.727 | 1.730 | 1.727 |
| prior->YCS_W->process[recruit_W].ycs_values{2015} | 1.681 | 1.681 | 1.687 | 1.687 | 1.687 | 1.684 | 1.681 | 1.684 |
| prior->YCS_W->process[recruit_W].ycs_values{2016} | 0.363 | 0.363 | 0.373 | 0.373 | 0.373 | 0.364 | 0.363 | 0.364 |
| prior->sel_Whome->selectivity[sel_Whome].v{1} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{2} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{3} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{4} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{5} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{6} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Whome->selectivity[sel_Whome].v{7} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{1} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{2} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{3} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{4} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{5} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{6} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{7} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Espmg_male->selectivity[sel_Espmg].v{8} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{1} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{2} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{3} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{4} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{5} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{6} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{7} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{8} | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Enspsl_mu->selectivity[Enspsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Enspsl_s_l->selectivity[Enspsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Enspsl_s_r->selectivity[Enspsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Wnspsl_mu->selectivity[Wnspsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Wnspsl_s_l->selectivity[Wnspsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Wnspsl_s_r->selectivity[Wnspsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Espsl_mu->selectivity[Espsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Espsl_s_l->selectivity[Espsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->Espsl_s_r->selectivity[Espsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->CRsl_mu->selectivity[CRsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->CRsl_s_l->selectivity[CRsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->CRsl_s_r->selectivity[CRsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SAsl_mu->selectivity[SAsl].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SAsl_s_l->selectivity[SAsl].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->SAsl_s_r->selectivity[SAsl].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| additional_prior->YCS.eq.16 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| additional_prior->sp.migr | 0.009 | 0.009 | 0.013 | 0.013 | 0.013 | 0.009 | 0.009 | 0.009 |
| jacobian->log_sum_b0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| total_score | 1946.810 | 1946.810 | 1946.540 | 1946.540 | 1946.540 | 1946.800 | 1946.810 | 1946.800 |
## [1] "CASAL base model convergence information"
## [1] "fmm: have converged: t = 8.24015e-007 f = 1946.54"
## [2] "Successful convergence in optimise"
## [3] "Minimiser achieved convergence after 599 quasi-Newton iterations using 669 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"
## [3] "Minimiser achieved convergence after 665 quasi-Newton iterations using 765 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 4.80834e-07 f = 1946.81"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 4.25092e-07 f = 1946.81"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model convergence information"
## [1] "Number of nonzeros in equality constraint Jacobian...: 0"
## [2] "Number of nonzeros in inequality constraint Jacobian.: 133"
## [3] "Number of nonzeros in Lagrangian Hessian.............: 8911"
## [4] "Number of Iterations....: 56"
## [5] "Number of objective function evaluations = 91"
## [6] "Number of objective gradient evaluations = 57"
## [7] "Number of equality constraint evaluations = 0"
## [8] "Number of inequality constraint evaluations = 91"
## [9] "Number of equality constraint Jacobian evaluations = 0"
## [10] "Number of inequality constraint Jacobian evaluations = 57"
## [11] "Number of Lagrangian Hessian evaluations = 56"
## [12] "EXIT: Optimal Solution Found."
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model convergence information"
## [1] "Number of nonzeros in equality constraint Jacobian...: 0"
## [2] "Number of nonzeros in inequality constraint Jacobian.: 133"
## [3] "Number of nonzeros in Lagrangian Hessian.............: 8911"
## [4] "Number of Iterations....: 56"
## [5] "Number of objective function evaluations = 95"
## [6] "Number of objective gradient evaluations = 57"
## [7] "Number of equality constraint evaluations = 0"
## [8] "Number of inequality constraint evaluations = 95"
## [9] "Number of equality constraint Jacobian evaluations = 0"
## [10] "Number of inequality constraint Jacobian evaluations = 57"
## [11] "Number of Lagrangian Hessian evaluations = 56"
## [12] "EXIT: Optimal Solution Found."
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL model warnings"
## parameter estimate lower.bound upper.bound
## 1 recruitment[E].YCS[25] 0.06 0.06 8.6
## 2 recruitment[W].YCS[25] 0.06 0.06 8.6
## 3 selectivity[CRsl].all[1] 1 1 17
## 4 selectivity[CRsl].all[2] 1 1 50
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
## parameter estimate lower.bound upper.bound
## 1 recruitment[E].YCS[25] 0.06 0.06 8.6
## 2 recruitment[W].YCS[25] 0.06 0.06 8.6
## 3 selectivity[CRsl].all[1] 1 1 17
## 4 selectivity[CRsl].all[2] 1 1 50
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## $warnings_found
## [1] 10
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
##
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## $warnings_found
## [1] 10
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
##
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 6
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model warnings"
## $warnings_found
## [1] 6
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model warnings"
## $warnings_found
## [1] 6
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## $warnings_found
## [1] 9
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_6
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_7
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $warning_8
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## $warnings_found
## [1] 9
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
##
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_7
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $warning_8
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
##
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 9
##
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
##
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
##
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
##
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
##
## $warning_5
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_6
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
##
## $warning_7
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
##
## $warning_8
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
##
## $type
## [1] "warnings"
Time series comparisons with CASAL base model results
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
Derived quantities
SB0, SBcurrent, MSY, F_MSY, others…
Comparison plots
## [1] "CASAL base parameter correlation range (excluding 1.0): -0.991373 0.996882"
## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.932422 0.996848"
## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.884321982666693 0.996651189974699"
## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.892527497796813 0.996650191207509"
## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.936296735406878 0.996647376630237"
## [1] "Casal2 cppad_casal_flags_on parameter correlation range (excluding 1.0): 0 0"
## [1] "Casal2 cppad_casal_flags_off parameter correlation range (excluding 1.0): 0 0"
## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.981865171360072 0.996644781288907"
## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.884163492058679 0.996597746044801"
## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.888515743660313 0.999511857241577"